Wall clock time and date at job start Mon Mar 30 2020 01:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.45558 * 2 1 4 4 C 1.54477 * 110.50913 * 122.60564 * 2 1 3 5 5 O 1.44426 * 104.80680 * 142.76319 * 4 2 1 6 6 C 1.44428 * 105.27224 * 319.48784 * 5 4 2 7 7 C 1.54510 * 110.51380 * 237.39201 * 2 1 3 8 8 C 1.53000 * 110.51046 * 122.57008 * 7 2 1 9 9 C 1.53005 * 110.50800 * 359.86665 * 7 2 1 10 10 C 1.50703 * 109.46692 * 179.97438 * 9 7 2 11 11 H 1.08002 * 120.00041 * 0.02562 * 10 9 7 12 12 C 1.37879 * 119.99992 * 179.97438 * 10 9 7 13 13 N 1.31521 * 119.99486 * 0.02562 * 12 10 9 14 14 Si 1.86790 * 120.00224 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47127 * 90.00042 * 14 12 10 16 16 H 1.48503 * 109.47492 * 209.99969 * 14 12 10 17 17 H 1.48505 * 109.47365 * 330.00145 * 14 12 10 18 18 H 1.09000 * 109.47208 * 300.70235 * 1 2 3 19 19 H 1.09004 * 109.46857 * 60.70516 * 1 2 3 20 20 H 1.08997 * 109.46980 * 180.69836 * 1 2 3 21 21 H 1.09005 * 110.37022 * 261.58956 * 4 2 1 22 22 H 1.09002 * 110.37769 * 23.81773 * 4 2 1 23 23 H 1.08996 * 110.37696 * 159.34250 * 6 5 4 24 24 H 1.09002 * 110.37347 * 281.56856 * 6 5 4 25 25 H 1.09004 * 109.46807 * 60.00376 * 8 7 2 26 26 H 1.09001 * 109.47212 * 180.02562 * 8 7 2 27 27 H 1.08999 * 109.47421 * 300.00390 * 8 7 2 28 28 H 1.08994 * 109.47071 * 299.99556 * 9 7 2 29 29 H 1.08998 * 109.47302 * 59.99813 * 9 7 2 30 30 H 0.97001 * 119.99413 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0713 -0.7796 1.2188 5 8 3.2418 -1.4678 0.7267 6 6 2.8802 -1.9399 -0.5895 7 6 2.0715 -0.7798 -1.2190 8 6 2.9819 0.1126 -2.0650 9 6 0.9171 -1.3238 -2.0632 10 6 1.4708 -2.0786 -3.2443 11 1 2.5391 -2.1622 -3.3790 12 6 0.6135 -2.6632 -4.1522 13 7 -0.6874 -2.5616 -3.9877 14 14 1.2997 -3.5993 -5.6158 15 1 1.4851 -5.0261 -5.2480 16 1 0.3521 -3.5008 -6.7549 17 1 2.6075 -3.0152 -6.0080 18 1 -0.3633 0.5247 0.8836 19 1 -0.3633 0.5029 -0.8963 20 1 -0.3633 -1.0276 0.0125 21 1 2.3442 -0.0914 2.0188 22 1 1.3287 -1.4953 1.5718 23 1 3.7744 -2.1430 -1.1787 24 1 2.2640 -2.8360 -0.5152 25 1 3.8227 0.4515 -1.4598 26 1 3.3535 -0.4534 -2.9193 27 1 2.4178 0.9755 -2.4189 28 1 0.3078 -1.9938 -1.4567 29 1 0.3038 -0.4952 -2.4170 30 1 -1.2905 -2.9726 -4.6267 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075540230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:24 Heat of formation + Delta-G solvation = -66.912808 kcal Electronic energy + Delta-G solvation = -11873.811613 eV Core-core repulsion = 9861.379617 eV Total energy + Delta-G solvation = -2012.431996 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.34787 -34.56026 -32.46785 -30.89280 -27.22701 -25.96581 -25.03324 -23.02993 -21.14555 -17.86864 -16.40457 -15.41455 -14.96556 -14.52473 -14.25900 -13.47966 -13.07238 -12.48530 -12.19338 -11.91293 -11.65987 -11.19711 -11.02473 -10.80861 -10.57769 -10.43686 -10.31861 -9.92305 -9.66362 -9.10709 -9.03775 -8.83644 -8.34149 -6.00819 -4.02095 3.31019 3.37887 3.40635 4.44939 4.63281 5.22954 5.31054 5.36766 5.56482 5.86875 5.88586 6.01315 6.08167 6.22004 6.25455 6.47314 6.54037 6.57970 6.64371 6.75693 6.82196 7.05316 7.08681 7.50014 7.65665 7.78613 7.98309 8.42152 9.03467 9.61660 11.10299 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.053658 B = 0.012749 C = 0.011670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.698510 B = 2195.657039 C = 2398.827985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 H 0.070 0.930 4 C 0.051 3.949 5 O -0.392 6.392 6 C 0.063 3.937 7 C -0.083 4.083 8 C -0.123 4.123 9 C 0.038 3.962 10 C -0.516 4.516 11 H 0.057 0.943 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.888 3.112 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 H 0.039 0.961 19 H 0.063 0.937 20 H 0.063 0.937 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.020 0.980 29 H 0.022 0.978 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.454 3.692 6.199 7.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.140 4.140 3 H 0.089 0.911 4 C -0.026 4.026 5 O -0.311 6.311 6 C -0.014 4.014 7 C -0.084 4.084 8 C -0.180 4.180 9 C 0.001 3.999 10 C -0.555 4.555 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.716 3.284 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 H 0.058 0.942 19 H 0.082 0.918 20 H 0.082 0.918 21 H 0.096 0.904 22 H 0.072 0.928 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.492 3.612 6.222 7.998 hybrid contribution 0.027 -0.530 -1.019 1.149 sum 3.519 3.082 5.204 6.997 Atomic orbital electron populations 1.21820 0.94394 1.02557 1.00797 1.22620 0.96575 0.99419 0.95412 0.91147 1.23411 0.88044 0.94766 0.96378 1.88994 1.35333 1.74118 1.32637 1.23563 0.99138 0.96792 0.81864 1.22070 0.97682 0.94153 0.94453 1.21721 0.97768 0.98986 0.99528 1.19229 0.91456 0.95760 0.93419 1.21289 0.92860 1.32937 1.08379 0.92493 1.25002 0.94844 0.96495 0.98030 1.69961 1.01782 1.45023 1.36721 0.86659 0.78850 0.80348 0.82544 1.20732 1.21324 1.19900 0.94164 0.91798 0.91761 0.90449 0.92816 0.89911 0.92031 0.94617 0.91585 0.93486 0.96168 0.95968 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.96 37.16 0.30 -2.08 16 2 C -0.12 -2.14 3.36 -89.05 -0.30 -2.44 16 3 H 0.07 1.16 7.73 -51.93 -0.40 0.76 16 4 C 0.05 0.85 7.18 37.93 0.27 1.12 16 5 O -0.39 -7.54 11.65 -35.23 -0.41 -7.95 16 6 C 0.06 1.26 6.21 38.10 0.24 1.49 16 7 C -0.08 -1.70 0.75 -152.77 -0.12 -1.82 16 8 C -0.12 -2.38 8.05 37.16 0.30 -2.08 16 9 C 0.04 0.94 2.80 -27.88 -0.08 0.86 16 10 C -0.52 -13.95 7.94 -34.44 -0.27 -14.22 16 11 H 0.06 1.50 6.49 -52.49 -0.34 1.16 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 14 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 19 H 0.06 1.16 6.95 -51.93 -0.36 0.80 16 20 H 0.06 1.19 6.69 -51.93 -0.35 0.84 16 21 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.05 0.86 7.85 -51.93 -0.41 0.46 16 23 H 0.08 1.62 7.88 -51.93 -0.41 1.21 16 24 H 0.06 1.30 7.84 -51.93 -0.41 0.89 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.35 6.47 -51.93 -0.34 1.01 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.02 0.53 6.73 -51.93 -0.35 0.18 16 29 H 0.02 0.58 6.88 -51.93 -0.36 0.23 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 237.90 15.07 3.59 3.59 Total: -1.00 -28.78 237.90 -5.41 -34.19 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -4.54 Total: -2.94 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 0.24 Total: -17.66 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.74 Total: -25.58 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.41 Total: -7.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.78 -5.41 -34.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.722 kcal (2) G-P(sol) polarization free energy of solvation -28.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds