Wall clock time and date at job start Mon Mar 30 2020 01:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.45558 * 2 1 4 4 C 1.54477 * 110.50913 * 122.60564 * 2 1 3 5 5 O 1.44426 * 104.80680 * 142.76319 * 4 2 1 6 6 C 1.44428 * 105.27224 * 319.48784 * 5 4 2 7 7 C 1.54510 * 110.51380 * 237.39201 * 2 1 3 8 8 C 1.53000 * 110.51046 * 122.57008 * 7 2 1 9 9 C 1.53005 * 110.50800 * 359.86665 * 7 2 1 10 10 C 1.50703 * 109.46692 * 179.97438 * 9 7 2 11 11 H 1.08002 * 120.00041 * 0.02562 * 10 9 7 12 12 C 1.37879 * 119.99992 * 179.97438 * 10 9 7 13 13 N 1.31521 * 119.99486 * 0.02562 * 12 10 9 14 14 Si 1.86790 * 120.00224 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47127 * 90.00042 * 14 12 10 16 16 H 1.48503 * 109.47492 * 209.99969 * 14 12 10 17 17 H 1.48505 * 109.47365 * 330.00145 * 14 12 10 18 18 H 1.09000 * 109.47208 * 300.70235 * 1 2 3 19 19 H 1.09004 * 109.46857 * 60.70516 * 1 2 3 20 20 H 1.08997 * 109.46980 * 180.69836 * 1 2 3 21 21 H 1.09005 * 110.37022 * 261.58956 * 4 2 1 22 22 H 1.09002 * 110.37769 * 23.81773 * 4 2 1 23 23 H 1.08996 * 110.37696 * 159.34250 * 6 5 4 24 24 H 1.09002 * 110.37347 * 281.56856 * 6 5 4 25 25 H 1.09004 * 109.46807 * 60.00376 * 8 7 2 26 26 H 1.09001 * 109.47212 * 180.02562 * 8 7 2 27 27 H 1.08999 * 109.47421 * 300.00390 * 8 7 2 28 28 H 1.08994 * 109.47071 * 299.99556 * 9 7 2 29 29 H 1.08998 * 109.47302 * 59.99813 * 9 7 2 30 30 H 0.97001 * 119.99413 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0713 -0.7796 1.2188 5 8 3.2418 -1.4678 0.7267 6 6 2.8802 -1.9399 -0.5895 7 6 2.0715 -0.7798 -1.2190 8 6 2.9819 0.1126 -2.0650 9 6 0.9171 -1.3238 -2.0632 10 6 1.4708 -2.0786 -3.2443 11 1 2.5391 -2.1622 -3.3790 12 6 0.6135 -2.6632 -4.1522 13 7 -0.6874 -2.5616 -3.9877 14 14 1.2997 -3.5993 -5.6158 15 1 1.4851 -5.0261 -5.2480 16 1 0.3521 -3.5008 -6.7549 17 1 2.6075 -3.0152 -6.0080 18 1 -0.3633 0.5247 0.8836 19 1 -0.3633 0.5029 -0.8963 20 1 -0.3633 -1.0276 0.0125 21 1 2.3442 -0.0914 2.0188 22 1 1.3287 -1.4953 1.5718 23 1 3.7744 -2.1430 -1.1787 24 1 2.2640 -2.8360 -0.5152 25 1 3.8227 0.4515 -1.4598 26 1 3.3535 -0.4534 -2.9193 27 1 2.4178 0.9755 -2.4189 28 1 0.3078 -1.9938 -1.4567 29 1 0.3038 -0.4952 -2.4170 30 1 -1.2905 -2.9726 -4.6267 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075540230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:24 Heat of formation + Delta-G solvation = -84.654172 kcal Electronic energy + Delta-G solvation = -11874.580936 eV Core-core repulsion = 9861.379617 eV Total energy + Delta-G solvation = -2013.201319 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.88334 -36.26171 -34.40403 -32.47997 -29.12448 -27.53974 -26.51530 -25.00795 -22.62837 -19.52239 -18.40626 -16.95367 -16.72212 -16.11014 -15.95598 -15.10101 -14.76236 -14.21580 -13.80966 -13.55233 -13.28723 -12.87853 -12.76111 -12.65570 -12.30269 -12.21075 -11.85483 -11.52322 -11.30478 -10.86495 -10.82462 -10.53897 -10.46425 -8.15177 -6.22805 1.40776 1.41277 1.51519 2.43012 3.15880 3.19919 3.75941 3.91701 4.07589 4.31971 4.43647 4.63038 4.66658 4.73869 4.82980 4.96063 4.96809 5.03903 5.19128 5.21458 5.31674 5.40947 5.46516 5.62069 5.78236 5.89540 5.97831 6.33535 6.92570 7.45054 8.96332 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.053658 B = 0.012749 C = 0.011670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.698510 B = 2195.657039 C = 2398.827985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.090 0.910 4 C 0.049 3.951 5 O -0.396 6.396 6 C 0.067 3.933 7 C -0.088 4.088 8 C -0.117 4.117 9 C 0.051 3.949 10 C -0.526 4.526 11 H 0.062 0.938 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.953 3.047 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.264 1.264 18 H 0.074 0.926 19 H 0.045 0.955 20 H 0.041 0.959 21 H 0.113 0.887 22 H 0.056 0.944 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.047 0.953 28 H -0.006 1.006 29 H -0.003 1.003 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.674 4.257 6.785 9.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 H 0.108 0.892 4 C -0.027 4.027 5 O -0.316 6.316 6 C -0.009 4.009 7 C -0.088 4.088 8 C -0.175 4.175 9 C 0.014 3.986 10 C -0.564 4.564 11 H 0.080 0.920 12 C -0.196 4.196 13 N -0.574 5.574 14 Si 0.779 3.221 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.188 1.188 18 H 0.093 0.907 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.131 0.869 22 H 0.074 0.926 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.726 4.182 6.818 9.291 hybrid contribution -0.381 -0.684 -1.151 1.392 sum 4.345 3.499 5.667 7.952 Atomic orbital electron populations 1.21742 0.94405 1.01357 1.01571 1.22628 0.96560 1.00157 0.94360 0.89153 1.23610 0.87390 0.95133 0.96585 1.88989 1.36378 1.74347 1.31858 1.23394 0.98845 0.95973 0.82690 1.22019 0.96503 0.95031 0.95292 1.21655 0.98215 0.98474 0.99113 1.19011 0.92339 0.94157 0.93097 1.21698 0.93173 1.32563 1.08946 0.91981 1.25855 0.95112 0.97633 1.01022 1.70092 1.03092 1.46330 1.37915 0.85621 0.78443 0.79052 0.79007 1.20174 1.21198 1.18787 0.90665 0.93633 0.94026 0.86916 0.92598 0.89521 0.93896 0.92222 0.93144 0.93350 0.98778 0.98442 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 7.96 71.98 0.57 -3.89 16 2 C -0.12 -3.92 3.36 -9.78 -0.03 -3.96 16 3 H 0.09 2.67 7.73 -2.39 -0.02 2.65 16 4 C 0.05 1.49 7.18 72.48 0.52 2.01 16 5 O -0.40 -14.34 11.65 -148.98 -1.74 -16.07 16 6 C 0.07 2.65 6.21 72.59 0.45 3.10 16 7 C -0.09 -3.53 0.75 -51.05 -0.04 -3.57 16 8 C -0.12 -4.36 8.05 71.98 0.58 -3.78 16 9 C 0.05 2.56 2.80 29.85 0.08 2.64 16 10 C -0.53 -28.67 7.94 25.60 0.20 -28.47 16 11 H 0.06 3.26 6.49 -2.91 -0.02 3.24 16 12 C 0.00 0.06 5.46 84.65 0.46 0.53 16 13 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 14 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 16 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 18 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 19 H 0.04 1.66 6.95 -2.39 -0.02 1.65 16 20 H 0.04 1.55 6.69 -2.39 -0.02 1.54 16 21 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 22 H 0.06 1.68 7.85 -2.39 -0.02 1.66 16 23 H 0.09 3.30 7.88 -2.39 -0.02 3.28 16 24 H 0.04 1.83 7.84 -2.39 -0.02 1.81 16 25 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.05 2.00 6.47 -2.39 -0.02 1.99 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H -0.01 -0.33 6.73 -2.39 -0.02 -0.35 16 29 H 0.00 -0.15 6.88 -2.39 -0.02 -0.16 16 30 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -61.08 237.90 4.48 -56.61 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.10 Total: 4.58 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 2.80 Total: -35.38 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.28 Total: -55.71 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -1.74 Total: -16.07 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -61.08 4.48 -56.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.049 kcal (2) G-P(sol) polarization free energy of solvation -61.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds