Wall clock time and date at job start Mon Mar 30 2020 01:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.45543 * 2 1 4 4 C 1.54480 * 110.51222 * 122.74790 * 2 1 3 5 5 O 1.44426 * 104.80157 * 142.62148 * 4 2 1 6 6 C 1.44428 * 105.27842 * 319.49460 * 5 4 2 7 7 C 1.54474 * 104.80091 * 40.51034 * 6 5 4 8 8 C 1.53005 * 110.62573 * 217.32105 * 7 6 5 9 9 C 1.52999 * 110.51578 * 94.66992 * 7 6 5 10 10 C 1.50696 * 109.47110 * 65.35079 * 9 7 6 11 11 H 1.07997 * 120.00012 * 0.02562 * 10 9 7 12 12 C 1.37877 * 119.99842 * 180.02562 * 10 9 7 13 13 N 1.31516 * 120.00069 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99806 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 90.00621 * 14 12 10 16 16 H 1.48503 * 109.47399 * 210.00111 * 14 12 10 17 17 H 1.48498 * 109.47295 * 330.00717 * 14 12 10 18 18 H 1.08995 * 109.47110 * 182.60773 * 1 2 3 19 19 H 1.09001 * 109.47247 * 302.60244 * 1 2 3 20 20 H 1.08998 * 109.47008 * 62.60436 * 1 2 3 21 21 H 1.09001 * 110.37826 * 261.45486 * 4 2 1 22 22 H 1.09006 * 110.36960 * 23.69056 * 4 2 1 23 23 H 1.08996 * 110.36874 * 281.67978 * 6 5 4 24 24 H 1.09000 * 110.37145 * 159.34128 * 6 5 4 25 25 H 1.08994 * 109.46953 * 296.61621 * 8 7 6 26 26 H 1.09004 * 109.47161 * 56.61489 * 8 7 6 27 27 H 1.08998 * 109.46910 * 176.61507 * 8 7 6 28 28 H 1.09008 * 109.46748 * 305.35400 * 9 7 6 29 29 H 1.08991 * 109.47440 * 185.35605 * 9 7 6 30 30 H 0.97000 * 119.99838 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0713 -0.7827 1.2169 5 8 3.2398 -1.4722 0.7220 6 6 2.8757 -1.9414 -0.5946 7 6 2.0714 -0.7798 -1.2190 8 6 0.9171 -1.3180 -2.0669 9 6 2.9845 0.1117 -2.0632 10 6 3.4987 -0.6710 -3.2439 11 1 3.2034 -1.7010 -3.3789 12 6 4.3460 -0.0720 -4.1517 13 7 4.7060 1.1822 -3.9870 14 14 4.9828 -1.0419 -5.6157 15 1 4.0485 -0.8829 -6.7590 16 1 6.3250 -0.5352 -5.9993 17 1 5.0811 -2.4785 -5.2528 18 1 -0.3633 -1.0266 0.0468 19 1 -0.3634 0.5537 0.8657 20 1 -0.3633 0.4729 -0.9124 21 1 2.3465 -0.0963 2.0177 22 1 1.3278 -1.4976 1.5695 23 1 2.2563 -2.8353 -0.5209 24 1 3.7689 -2.1451 -1.1852 25 1 1.3170 -1.8929 -2.9021 26 1 0.2845 -1.9600 -1.4537 27 1 0.3274 -0.4846 -2.4487 28 1 3.8252 0.4485 -1.4566 29 1 2.4225 0.9759 -2.4170 30 1 4.3750 1.6859 -3.2270 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075540233.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:29 Heat of formation + Delta-G solvation = -69.983365 kcal Electronic energy + Delta-G solvation = -11870.533737 eV Core-core repulsion = 9857.968592 eV Total energy + Delta-G solvation = -2012.565145 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.47010 -34.66311 -32.93996 -30.74366 -26.96541 -25.51956 -25.49428 -23.34260 -20.98439 -18.16906 -16.49498 -15.86046 -14.97370 -14.64899 -13.78406 -13.63554 -13.54986 -12.62030 -12.33034 -11.98227 -11.80055 -11.17177 -10.89652 -10.75869 -10.59677 -10.54449 -10.14910 -10.03633 -9.84561 -9.44990 -9.05455 -8.40894 -8.28729 -6.31847 -4.00606 3.44506 3.48308 3.63572 4.56317 4.56575 5.12207 5.20952 5.38979 5.46395 5.70370 5.73961 5.79423 5.93409 6.02703 6.04777 6.21225 6.33646 6.36448 6.53392 6.58645 6.79767 6.94843 7.08371 7.29338 7.47879 7.57581 8.24484 8.49615 8.92123 9.71011 11.08242 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.056198 B = 0.012056 C = 0.011722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.120276 B = 2321.993917 C = 2388.147498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 H 0.078 0.922 4 C 0.050 3.950 5 O -0.381 6.381 6 C 0.058 3.942 7 C -0.075 4.075 8 C -0.124 4.124 9 C 0.025 3.975 10 C -0.595 4.595 11 H 0.052 0.948 12 C 0.014 3.986 13 N -0.915 5.915 14 Si 1.068 2.932 15 H -0.289 1.289 16 H -0.285 1.285 17 H -0.289 1.289 18 H 0.055 0.945 19 H 0.045 0.955 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.010 0.990 29 H 0.007 0.993 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 -4.070 6.356 10.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 H 0.096 0.904 4 C -0.027 4.027 5 O -0.300 6.300 6 C -0.018 4.018 7 C -0.075 4.075 8 C -0.181 4.181 9 C -0.011 4.011 10 C -0.634 4.634 11 H 0.070 0.930 12 C -0.190 4.190 13 N -0.551 5.551 14 Si 0.897 3.103 15 H -0.216 1.216 16 H -0.211 1.211 17 H -0.215 1.215 18 H 0.074 0.926 19 H 0.065 0.935 20 H 0.079 0.921 21 H 0.098 0.902 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.025 0.975 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.063 -4.004 5.121 8.889 hybrid contribution -1.215 -0.004 1.255 1.747 sum -7.278 -4.009 6.376 10.473 Atomic orbital electron populations 1.21845 0.95066 1.01395 1.01267 1.22679 0.95711 1.00533 0.95588 0.90403 1.23398 0.88210 0.94640 0.96451 1.89067 1.35012 1.73835 1.32042 1.23609 1.00523 0.95070 0.82597 1.21863 0.95926 0.95575 0.94158 1.21798 0.96676 1.00197 0.99477 1.19247 0.93303 0.94274 0.94318 1.22051 1.31715 0.99514 1.10084 0.92990 1.25797 0.94756 0.96985 1.01427 1.70741 1.43946 1.08970 1.31438 0.83552 0.76687 0.74721 0.75327 1.21579 1.21072 1.21487 0.92618 0.93550 0.92107 0.90241 0.93199 0.93990 0.87801 0.91672 0.94470 0.93040 0.97129 0.97507 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.97 37.15 0.30 -1.69 16 2 C -0.13 -2.22 3.36 -89.05 -0.30 -2.52 16 3 H 0.08 1.44 7.73 -51.93 -0.40 1.04 16 4 C 0.05 0.83 7.19 37.93 0.27 1.11 16 5 O -0.38 -7.78 11.65 -35.23 -0.41 -8.19 16 6 C 0.06 1.19 6.52 37.93 0.25 1.43 16 7 C -0.07 -1.54 0.75 -152.94 -0.11 -1.66 16 8 C -0.12 -2.33 7.02 37.16 0.26 -2.07 16 9 C 0.03 0.65 3.20 -27.89 -0.09 0.56 16 10 C -0.60 -16.53 7.40 -34.44 -0.26 -16.78 16 11 H 0.05 1.40 6.41 -52.49 -0.34 1.07 16 12 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 13 N -0.91 -28.24 13.65 55.43 0.76 -27.48 16 14 Si 1.07 25.42 29.90 -169.99 -5.08 20.33 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 18 H 0.05 0.75 6.73 -51.93 -0.35 0.40 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.06 0.89 6.88 -51.93 -0.36 0.53 16 21 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 22 H 0.05 0.73 7.83 -51.93 -0.41 0.33 16 23 H 0.04 0.76 7.86 -51.93 -0.41 0.35 16 24 H 0.10 2.34 7.02 -51.93 -0.36 1.97 16 25 H 0.06 1.31 6.53 -51.93 -0.34 0.97 16 26 H 0.04 0.59 6.70 -51.93 -0.35 0.24 16 27 H 0.05 0.95 6.95 -51.93 -0.36 0.58 16 28 H 0.01 0.29 8.01 -51.92 -0.42 -0.12 16 29 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 30 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 LS Contribution 235.55 15.07 3.55 3.55 Total: -1.00 -30.37 235.55 -5.40 -35.78 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.44 Total: -2.68 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 0.22 Total: -21.31 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 0.76 Total: -27.48 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.41 Total: -8.19 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.37 -5.40 -35.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540233.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.207 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds