Wall clock time and date at job start Mon Mar 30 2020 01:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.45543 * 2 1 4 4 C 1.54480 * 110.51222 * 122.74790 * 2 1 3 5 5 O 1.44426 * 104.80157 * 142.62148 * 4 2 1 6 6 C 1.44428 * 105.27842 * 319.49460 * 5 4 2 7 7 C 1.54474 * 104.80091 * 40.51034 * 6 5 4 8 8 C 1.53005 * 110.62573 * 217.32105 * 7 6 5 9 9 C 1.52999 * 110.51578 * 94.66992 * 7 6 5 10 10 C 1.50696 * 109.47110 * 65.35079 * 9 7 6 11 11 H 1.07997 * 120.00012 * 0.02562 * 10 9 7 12 12 C 1.37877 * 119.99842 * 180.02562 * 10 9 7 13 13 N 1.31516 * 120.00069 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99806 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 90.00621 * 14 12 10 16 16 H 1.48503 * 109.47399 * 210.00111 * 14 12 10 17 17 H 1.48498 * 109.47295 * 330.00717 * 14 12 10 18 18 H 1.08995 * 109.47110 * 182.60773 * 1 2 3 19 19 H 1.09001 * 109.47247 * 302.60244 * 1 2 3 20 20 H 1.08998 * 109.47008 * 62.60436 * 1 2 3 21 21 H 1.09001 * 110.37826 * 261.45486 * 4 2 1 22 22 H 1.09006 * 110.36960 * 23.69056 * 4 2 1 23 23 H 1.08996 * 110.36874 * 281.67978 * 6 5 4 24 24 H 1.09000 * 110.37145 * 159.34128 * 6 5 4 25 25 H 1.08994 * 109.46953 * 296.61621 * 8 7 6 26 26 H 1.09004 * 109.47161 * 56.61489 * 8 7 6 27 27 H 1.08998 * 109.46910 * 176.61507 * 8 7 6 28 28 H 1.09008 * 109.46748 * 305.35400 * 9 7 6 29 29 H 1.08991 * 109.47440 * 185.35605 * 9 7 6 30 30 H 0.97000 * 119.99838 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0713 -0.7827 1.2169 5 8 3.2398 -1.4722 0.7220 6 6 2.8757 -1.9414 -0.5946 7 6 2.0714 -0.7798 -1.2190 8 6 0.9171 -1.3180 -2.0669 9 6 2.9845 0.1117 -2.0632 10 6 3.4987 -0.6710 -3.2439 11 1 3.2034 -1.7010 -3.3789 12 6 4.3460 -0.0720 -4.1517 13 7 4.7060 1.1822 -3.9870 14 14 4.9828 -1.0419 -5.6157 15 1 4.0485 -0.8829 -6.7590 16 1 6.3250 -0.5352 -5.9993 17 1 5.0811 -2.4785 -5.2528 18 1 -0.3633 -1.0266 0.0468 19 1 -0.3634 0.5537 0.8657 20 1 -0.3633 0.4729 -0.9124 21 1 2.3465 -0.0963 2.0177 22 1 1.3278 -1.4976 1.5695 23 1 2.2563 -2.8353 -0.5209 24 1 3.7689 -2.1451 -1.1852 25 1 1.3170 -1.8929 -2.9021 26 1 0.2845 -1.9600 -1.4537 27 1 0.3274 -0.4846 -2.4487 28 1 3.8252 0.4485 -1.4566 29 1 2.4225 0.9759 -2.4170 30 1 4.3750 1.6859 -3.2270 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075540233.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:29 Heat of formation + Delta-G solvation = -89.744522 kcal Electronic energy + Delta-G solvation = -11871.390645 eV Core-core repulsion = 9857.968592 eV Total energy + Delta-G solvation = -2013.422053 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.00482 -36.41861 -34.83017 -32.36562 -28.76091 -27.16819 -26.87843 -25.33678 -22.59095 -19.76575 -18.61204 -17.40835 -16.47835 -16.17156 -15.64925 -15.28282 -15.03257 -14.31589 -14.12603 -13.64118 -13.34513 -12.78524 -12.64092 -12.36272 -12.29001 -11.98802 -11.91584 -11.59724 -11.49464 -11.11918 -10.67388 -10.51802 -10.40991 -8.64453 -6.33556 1.51627 1.61182 1.77677 2.57595 3.11379 3.19555 3.66079 3.84015 3.98990 4.22875 4.33369 4.47464 4.56810 4.66639 4.76353 4.83908 4.86853 4.93892 5.10963 5.14569 5.21406 5.29401 5.40512 5.43154 5.56803 5.92423 6.07197 6.22667 6.60947 7.47899 8.75424 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.056198 B = 0.012056 C = 0.011722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.120276 B = 2321.993917 C = 2388.147498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 H 0.056 0.944 4 C 0.049 3.951 5 O -0.406 6.406 6 C 0.061 3.939 7 C -0.080 4.080 8 C -0.117 4.117 9 C 0.032 3.968 10 C -0.597 4.597 11 H 0.060 0.940 12 C -0.045 4.045 13 N -0.944 5.944 14 Si 1.117 2.883 15 H -0.272 1.272 16 H -0.288 1.288 17 H -0.266 1.266 18 H 0.073 0.927 19 H 0.071 0.929 20 H 0.053 0.947 21 H 0.096 0.904 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.049 0.951 28 H -0.026 1.026 29 H -0.018 1.018 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.852 -5.735 6.881 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.145 4.145 3 H 0.074 0.926 4 C -0.028 4.028 5 O -0.326 6.326 6 C -0.015 4.015 7 C -0.080 4.080 8 C -0.174 4.174 9 C -0.005 4.005 10 C -0.634 4.634 11 H 0.079 0.921 12 C -0.241 4.241 13 N -0.583 5.583 14 Si 0.938 3.062 15 H -0.198 1.198 16 H -0.214 1.214 17 H -0.191 1.191 18 H 0.092 0.908 19 H 0.090 0.910 20 H 0.072 0.928 21 H 0.114 0.886 22 H 0.100 0.900 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.068 0.932 28 H -0.008 1.008 29 H 0.001 0.999 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.708 -5.674 5.667 11.123 hybrid contribution -0.713 0.552 1.165 1.473 sum -8.422 -5.122 6.832 11.993 Atomic orbital electron populations 1.21802 0.91953 1.02933 1.02184 1.22654 0.98274 0.99004 0.94544 0.92587 1.23649 0.87694 0.95304 0.96116 1.89034 1.37271 1.74424 1.31833 1.23498 0.99472 0.96011 0.82505 1.21825 0.95843 0.95365 0.94998 1.21736 0.96178 1.00446 0.99078 1.19122 0.92876 0.94333 0.94208 1.22434 1.30850 0.99931 1.10235 0.92149 1.27397 0.95110 0.97092 1.04533 1.70887 1.45620 1.10291 1.31458 0.82942 0.76199 0.74446 0.72568 1.19758 1.21356 1.19092 0.90821 0.91029 0.92775 0.88580 0.89951 0.90807 0.91035 0.93503 0.90632 0.93152 1.00809 0.99929 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 7.97 71.98 0.57 -2.73 16 2 C -0.13 -4.22 3.36 -9.78 -0.03 -4.26 16 3 H 0.06 2.09 7.73 -2.38 -0.02 2.07 16 4 C 0.05 1.48 7.19 72.49 0.52 2.00 16 5 O -0.41 -16.09 11.65 -148.98 -1.74 -17.82 16 6 C 0.06 2.44 6.52 72.48 0.47 2.91 16 7 C -0.08 -3.24 0.75 -51.17 -0.04 -3.28 16 8 C -0.12 -4.14 7.02 71.98 0.51 -3.64 16 9 C 0.03 1.68 3.20 29.85 0.10 1.77 16 10 C -0.60 -33.71 7.40 25.60 0.19 -33.52 16 11 H 0.06 3.25 6.41 -2.91 -0.02 3.24 16 12 C -0.04 -2.64 5.46 84.65 0.46 -2.18 16 13 N -0.94 -60.28 13.65 21.45 0.29 -59.99 16 14 Si 1.12 51.01 29.90 68.60 2.05 53.06 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 18 H 0.07 1.60 6.73 -2.39 -0.02 1.58 16 19 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 20 H 0.05 1.44 6.88 -2.39 -0.02 1.42 16 21 H 0.10 2.58 8.14 -2.39 -0.02 2.57 16 22 H 0.08 2.01 7.83 -2.38 -0.02 1.99 16 23 H 0.07 2.45 7.86 -2.39 -0.02 2.43 16 24 H 0.07 3.26 7.02 -2.39 -0.02 3.24 16 25 H 0.05 1.80 6.53 -2.39 -0.02 1.79 16 26 H 0.07 2.09 6.70 -2.38 -0.02 2.07 16 27 H 0.05 1.76 6.95 -2.39 -0.02 1.75 16 28 H -0.03 -1.57 8.01 -2.38 -0.02 -1.59 16 29 H -0.02 -1.00 8.01 -2.39 -0.02 -1.02 16 30 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 Total: -1.00 -67.30 235.55 4.56 -62.74 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.20 Total: 4.94 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 2.75 Total: -42.92 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.29 Total: -59.99 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -1.74 Total: -17.82 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Total: -67.30 4.56 -62.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540233.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.005 kcal (2) G-P(sol) polarization free energy of solvation -67.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds