Wall clock time and date at job start Mon Mar 30 2020 02:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99972 * 2 1 4 4 H 1.08992 * 109.47388 * 29.99901 * 3 2 1 5 5 C 1.53000 * 109.46726 * 269.99642 * 3 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47317 * 59.99960 * 6 5 3 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 5 9 9 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 10 10 C 1.50699 * 109.47155 * 179.97438 * 8 7 6 11 11 H 1.07999 * 120.00019 * 239.99808 * 10 8 7 12 12 C 1.37877 * 120.00129 * 59.99523 * 10 8 7 13 13 N 1.31516 * 120.00113 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00167 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47319 * 59.99928 * 14 12 10 16 16 H 1.48503 * 109.47266 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46734 * 299.99975 * 14 12 10 18 18 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 19 19 H 1.08999 * 109.46765 * 59.99999 * 1 2 3 20 20 H 1.08998 * 109.46826 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47264 * 300.00265 * 1 2 3 22 22 H 1.09002 * 109.47398 * 300.00244 * 5 3 2 23 23 H 1.09001 * 109.47194 * 60.00425 * 5 3 2 24 24 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 6 5 3 26 26 H 1.09000 * 109.47486 * 180.02562 * 7 6 5 27 27 H 1.09002 * 109.46716 * 60.00091 * 7 6 5 28 28 H 0.96999 * 120.00366 * 179.97438 * 13 12 10 29 29 H 1.08993 * 109.47194 * 179.97438 * 18 8 7 30 30 H 1.09002 * 109.46695 * 59.99734 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 2.8406 3.1687 -1.4426 7 6 4.1893 3.1260 -0.7215 8 6 3.9819 2.6601 0.7210 9 1 3.3170 3.3543 1.2350 10 6 5.3104 2.6174 1.4311 11 1 5.6738 1.6868 1.8414 12 6 6.0620 3.7664 1.5570 13 7 5.6194 4.8998 1.0577 14 14 7.7092 3.7134 2.4365 15 1 8.6144 2.7676 1.7357 16 1 8.3140 5.0697 2.4371 17 1 7.5083 3.2610 3.8366 18 6 3.3590 1.2626 0.7211 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 2.8830 1.0773 -1.9564 23 1 1.2569 1.8014 -1.9564 24 1 2.9880 3.5008 -2.4702 25 1 2.1757 3.8629 -0.9287 26 1 4.6329 4.1217 -0.7212 27 1 4.8542 2.4318 -1.2355 28 1 6.1480 5.7082 1.1466 29 1 3.2117 0.9306 1.7487 30 1 4.0239 0.5685 0.2071 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075540356.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:37 Heat of formation + Delta-G solvation = -91.415481 kcal Electronic energy + Delta-G solvation = -11648.656038 eV Core-core repulsion = 9635.161527 eV Total energy + Delta-G solvation = -2013.494511 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.01239 -37.43733 -34.59387 -31.70188 -30.49103 -27.22781 -26.76393 -23.05024 -22.61612 -20.55557 -18.55024 -17.18790 -16.52156 -16.28546 -15.92897 -15.18291 -14.70598 -14.40508 -14.09965 -13.40209 -13.34904 -12.82909 -12.59064 -12.43740 -12.39460 -11.85542 -11.72878 -11.58312 -11.35100 -10.93694 -10.83881 -10.41321 -10.17691 -8.08052 -6.22024 1.41907 1.43115 1.50880 2.43233 2.93369 3.18211 3.94165 4.02273 4.31160 4.40268 4.55473 4.60329 4.70953 4.73870 4.83532 4.86584 4.93519 5.04042 5.11892 5.23851 5.37470 5.45197 5.61134 5.68437 6.00050 6.15499 6.36639 6.43354 6.88603 7.45581 8.95995 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.066507 B = 0.010856 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.906066 B = 2578.664209 C = 2858.042331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.095 3.905 4 H 0.056 0.944 5 C -0.125 4.125 6 C -0.110 4.110 7 C -0.107 4.107 8 C 0.050 3.950 9 H -0.002 1.002 10 C -0.538 4.538 11 H 0.049 0.951 12 C 0.014 3.986 13 N -0.915 5.915 14 Si 0.953 3.047 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.273 1.273 18 C -0.095 4.095 19 H 0.050 0.950 20 H 0.101 0.899 21 H 0.043 0.957 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.261 0.739 29 H 0.043 0.957 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -5.009 -3.581 9.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.037 3.963 4 H 0.074 0.926 5 C -0.163 4.163 6 C -0.147 4.147 7 C -0.145 4.145 8 C 0.031 3.969 9 H 0.016 0.984 10 C -0.576 4.576 11 H 0.067 0.933 12 C -0.185 4.185 13 N -0.554 5.554 14 Si 0.779 3.221 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.198 1.198 18 C -0.133 4.133 19 H 0.069 0.931 20 H 0.119 0.881 21 H 0.062 0.938 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.593 -4.988 -3.596 9.771 hybrid contribution 0.816 0.430 0.581 1.090 sum -6.777 -4.558 -3.015 8.706 Atomic orbital electron populations 1.22971 0.79975 1.03730 1.00570 1.87866 1.21240 1.28606 1.95260 1.22154 0.94434 0.83609 0.96060 0.92563 1.21906 1.01131 0.96915 0.96306 1.21492 0.97017 0.96092 1.00142 1.21480 0.95447 1.01531 0.96075 1.18575 0.93998 0.90874 0.93435 0.98411 1.21537 1.05134 0.94808 1.36152 0.93282 1.25719 1.01315 0.95176 0.96284 1.69999 1.39348 0.99777 1.46301 0.85689 0.80024 0.77195 0.79215 1.19757 1.20688 1.19779 1.21562 0.94507 0.98767 0.98481 0.93105 0.88093 0.93848 0.92114 0.90476 0.91407 0.92993 0.91964 0.95473 0.92958 0.93795 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 10.82 113.37 1.23 1.79 16 2 O -0.41 -14.00 10.35 -148.98 -1.54 -15.54 16 3 C 0.09 3.49 2.61 30.60 0.08 3.57 16 4 H 0.06 2.02 7.79 -2.39 -0.02 2.00 16 5 C -0.12 -4.22 5.54 30.59 0.17 -4.05 16 6 C -0.11 -4.15 5.92 30.59 0.18 -3.97 16 7 C -0.11 -5.15 4.98 30.60 0.15 -5.00 16 8 C 0.05 2.56 2.10 -11.54 -0.02 2.54 16 9 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 10 C -0.54 -30.57 8.56 25.60 0.22 -30.35 16 11 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 12 C 0.01 0.77 5.30 84.65 0.45 1.22 16 13 N -0.91 -53.20 11.32 21.45 0.24 -52.96 16 14 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 C -0.10 -4.24 4.79 30.59 0.15 -4.10 16 19 H 0.05 1.07 7.87 -2.39 -0.02 1.05 16 20 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.04 0.99 8.09 -2.39 -0.02 0.97 16 22 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.08 2.15 7.87 -2.39 -0.02 2.14 16 24 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -60.93 242.02 4.41 -56.52 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.08 Total: 4.06 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 2.60 Total: -38.35 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.24 Total: -52.96 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -1.54 Total: -15.54 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -60.93 4.41 -56.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540356.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.896 kcal (2) G-P(sol) polarization free energy of solvation -60.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds