Wall clock time and date at job start Mon Mar 30 2020 02:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.46891 * 179.97438 * 9 7 2 11 11 C 1.48565 * 110.99854 * 285.42131 * 10 9 7 12 12 C 1.54381 * 104.59216 * 200.95507 * 11 10 9 13 13 C 1.54260 * 105.06054 * 23.85402 * 12 11 10 14 14 C 1.48550 * 111.00301 * 170.00105 * 10 9 7 15 15 H 1.09004 * 110.41232 * 40.25837 * 14 10 9 16 16 C 1.53001 * 110.41521 * 277.93934 * 14 10 9 17 17 N 1.46897 * 109.46882 * 54.99517 * 16 14 10 18 18 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 20 20 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 21 21 H 1.08996 * 110.41301 * 319.73474 * 11 10 9 22 22 H 1.08998 * 110.41176 * 82.18293 * 11 10 9 23 23 H 1.08996 * 110.32695 * 264.95613 * 12 11 10 24 24 H 1.09002 * 110.40627 * 142.79357 * 12 11 10 25 25 H 1.08999 * 110.32599 * 241.10058 * 13 12 11 26 26 H 1.09004 * 110.32622 * 118.89352 * 13 12 11 27 27 H 1.08998 * 109.47867 * 174.99895 * 16 14 10 28 28 H 1.09009 * 109.46898 * 295.00047 * 16 14 10 29 29 H 1.00898 * 110.99861 * 56.05017 * 17 16 14 30 30 H 1.00898 * 111.00294 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 3.8316 -3.2035 1.3363 12 6 4.8322 -4.3791 1.3463 13 6 5.9077 -3.9989 0.3078 14 6 5.4663 -2.6256 -0.2423 15 1 5.9664 -1.8213 0.2973 16 6 5.7639 -2.5273 -1.7399 17 7 5.1305 -1.3200 -2.2867 18 1 -0.4849 0.8401 -0.0004 19 1 3.8746 -0.6800 -0.8911 20 1 3.8753 -0.6803 0.8889 21 1 4.0758 -2.4897 2.1230 22 1 2.8126 -3.5707 1.4577 23 1 4.3337 -5.3032 1.0540 24 1 5.2810 -4.4877 2.3337 25 1 5.9370 -4.7364 -0.4942 26 1 6.8841 -3.9192 0.7857 27 1 6.8417 -2.4735 -1.8935 28 1 5.3680 -3.4070 -2.2475 29 1 5.4328 -0.4960 -1.7889 30 1 5.3121 -1.2324 -3.2753 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082631943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:28 Heat of formation + Delta-G solvation = -15.149079 kcal Electronic energy + Delta-G solvation = -11725.905607 eV Core-core repulsion = 9748.011006 eV Total energy + Delta-G solvation = -1977.894601 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.98097 -35.16048 -34.98883 -32.86071 -29.86091 -28.65204 -25.13287 -23.32387 -21.54605 -21.14481 -18.71848 -17.06072 -16.85527 -16.11305 -15.75711 -15.57664 -14.83832 -14.53876 -14.21315 -13.59664 -13.36997 -12.90211 -12.56466 -12.37271 -12.09186 -11.85920 -11.83354 -11.66227 -11.33019 -11.20948 -10.71495 -9.26992 -9.01949 -8.21482 -6.21013 1.35164 1.38675 1.50543 2.40337 3.12844 3.36291 3.62879 3.92994 4.09200 4.20088 4.30501 4.47348 4.66325 4.74881 4.82814 4.94288 5.02195 5.08853 5.11530 5.26717 5.33404 5.46228 5.76234 6.07352 6.31036 6.45341 6.71568 6.77727 6.84061 7.40472 8.96416 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.044102 B = 0.014164 C = 0.011937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.733201 B = 1976.368513 C = 2345.147187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.001 4.001 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.239 1.239 6 H -0.284 1.284 7 C -0.503 4.503 8 H 0.023 0.977 9 C 0.152 3.848 10 N -0.501 5.501 11 C 0.033 3.967 12 C -0.115 4.115 13 C -0.108 4.108 14 C 0.046 3.954 15 H 0.036 0.964 16 C 0.087 3.913 17 N -0.856 5.856 18 H 0.263 0.737 19 H 0.083 0.917 20 H -0.035 1.035 21 H 0.023 0.977 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.337 0.663 30 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.105 -4.058 -0.725 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.162 1.162 6 H -0.210 1.210 7 C -0.542 4.542 8 H 0.041 0.959 9 C 0.024 3.976 10 N -0.225 5.225 11 C -0.096 4.096 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.063 4.063 15 H 0.054 0.946 16 C -0.044 4.044 17 N -0.388 5.388 18 H 0.072 0.928 19 H 0.101 0.899 20 H -0.018 1.018 21 H 0.041 0.959 22 H 0.066 0.934 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.150 0.850 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 14.988 -4.572 -0.945 15.698 hybrid contribution 0.710 1.569 0.589 1.820 sum 15.698 -3.003 -0.356 15.986 Atomic orbital electron populations 1.70086 1.08275 1.27790 1.53860 1.25904 0.95633 1.03343 0.94785 0.85625 0.79908 0.78170 0.78635 1.20047 1.16173 1.20990 1.21310 0.91843 0.92577 1.48439 0.95888 1.20506 0.93739 0.87173 0.96195 1.65133 1.12589 1.18706 1.26089 1.23005 0.99382 0.96467 0.90706 1.22283 0.95801 0.97205 1.00054 1.22285 0.98571 0.95052 0.98685 1.22876 0.89179 0.97748 0.96476 0.94623 1.21708 0.95886 0.93556 0.93257 1.58700 1.66683 1.05253 1.08150 0.92779 0.89932 1.01763 0.95864 0.93427 0.90998 0.89745 0.90015 0.89241 0.93069 0.91228 0.84975 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.00 13.96 21.45 0.30 -62.70 16 2 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 3 Si 0.95 45.98 27.47 68.60 1.88 47.86 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 6 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 7 C -0.50 -31.08 9.53 25.60 0.24 -30.83 16 8 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 9 C 0.15 7.63 3.48 85.56 0.30 7.93 16 10 N -0.50 -21.85 4.98 -861.24 -4.29 -26.14 16 11 C 0.03 1.32 6.12 86.45 0.53 1.85 16 12 C -0.12 -3.27 7.00 31.49 0.22 -3.05 16 13 C -0.11 -2.69 6.55 31.49 0.21 -2.49 16 14 C 0.05 1.50 2.68 45.07 0.12 1.62 16 15 H 0.04 1.16 8.00 -2.38 -0.02 1.14 16 16 C 0.09 2.45 6.50 86.30 0.56 3.01 16 17 N -0.86 -26.90 7.30 -186.72 -1.36 -28.26 16 18 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 19 H 0.08 3.98 3.69 -2.39 -0.01 3.97 16 20 H -0.04 -1.79 7.19 -2.38 -0.02 -1.80 16 21 H 0.02 0.95 7.75 -2.39 -0.02 0.93 16 22 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.08 1.85 7.75 -2.39 -0.02 1.83 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 2.04 7.98 -2.38 -0.02 2.02 16 29 H 0.34 10.28 8.01 -89.70 -0.72 9.56 16 30 H 0.35 8.86 9.08 -89.70 -0.81 8.04 16 Total: -1.00 -72.64 238.30 -1.29 -73.93 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -0.46 Total: 16.90 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 2.64 Total: -21.58 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -5.35 Total: -117.10 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Total: -72.64 -1.29 -73.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082631943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.782 kcal (2) G-P(sol) polarization free energy of solvation -72.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds