Wall clock time and date at job start Mon Mar 30 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48554 * 2 1 4 4 C 1.53235 * 109.49067 * 239.94962 * 2 1 3 5 5 N 1.47078 * 108.51824 * 186.18179 * 4 2 1 6 6 C 1.36946 * 120.88073 * 231.18513 * 5 4 2 7 7 H 1.08000 * 119.99929 * 153.04730 * 6 5 4 8 8 C 1.38809 * 119.99745 * 333.32586 * 6 5 4 9 9 N 1.31612 * 120.00288 * 342.95459 * 8 6 5 10 10 Si 1.86798 * 119.99553 * 162.95042 * 8 6 5 11 11 H 1.48508 * 109.46890 * 90.00114 * 10 8 6 12 12 H 1.48506 * 109.47355 * 209.99720 * 10 8 6 13 13 H 1.48503 * 109.47509 * 330.00412 * 10 8 6 14 14 C 1.47078 * 118.23992 * 51.45707 * 5 4 2 15 15 H 1.09000 * 109.63297 * 188.82964 * 14 5 4 16 16 C 1.53006 * 109.62575 * 68.25146 * 14 5 4 17 17 C 1.53695 * 108.27683 * 308.48715 * 14 5 4 18 18 N 1.46891 * 109.51633 * 120.06702 * 2 1 3 19 19 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47279 * 300.05177 * 1 2 3 21 21 H 1.08998 * 109.47235 * 60.04985 * 1 2 3 22 22 H 1.08999 * 109.63227 * 66.47347 * 4 2 1 23 23 H 1.08997 * 109.62904 * 305.89356 * 4 2 1 24 24 H 0.97004 * 119.99820 * 180.02562 * 9 8 6 25 25 H 1.09000 * 109.47015 * 60.00077 * 16 14 5 26 26 H 1.08996 * 109.46647 * 180.02562 * 16 14 5 27 27 H 1.09004 * 109.47079 * 300.00224 * 16 14 5 28 28 H 1.09006 * 109.64671 * 294.07770 * 17 14 5 29 29 H 1.08995 * 109.42302 * 173.94564 * 17 14 5 30 30 H 1.00902 * 111.00562 * 307.23224 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2504 5 7 3.5043 -0.8422 -1.1559 6 6 4.3101 -0.4413 -2.1880 7 1 5.3215 -0.1187 -1.9895 8 6 3.8251 -0.4440 -3.4886 9 7 2.7413 -1.1292 -3.7854 10 14 4.7107 0.5250 -4.8176 11 1 5.7334 -0.3383 -5.4613 12 1 3.7304 0.9759 -5.8379 13 1 5.3725 1.7076 -4.2102 14 6 4.0785 -1.4087 0.0740 15 1 5.1618 -1.2887 0.0614 16 6 3.7231 -2.8938 0.1704 17 6 3.4872 -0.6530 1.2746 18 7 2.0208 -0.6937 1.1982 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5146 0.8895 21 1 -0.3633 0.5130 -0.8904 22 1 1.7772 -0.1499 -2.1389 23 1 1.5961 -1.7167 -1.3065 24 1 2.4027 -1.1314 -4.6944 25 1 4.1271 -3.4209 -0.6939 26 1 4.1494 -3.3108 1.0827 27 1 2.6392 -3.0074 0.1912 28 1 3.8236 0.3837 1.2568 29 1 3.8166 -1.1269 2.1991 30 1 1.6044 -0.3108 2.0338 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083125721.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:41 Heat of formation + Delta-G solvation = 18.857439 kcal Electronic energy + Delta-G solvation = -12015.141048 eV Core-core repulsion = 10038.721080 eV Total energy + Delta-G solvation = -1976.419968 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.98215 -33.79197 -32.47569 -30.40711 -28.22154 -25.63798 -24.51090 -22.56707 -20.65856 -18.12144 -16.74932 -15.47831 -14.56411 -14.16428 -13.69542 -13.43472 -13.24649 -12.52439 -12.06293 -11.59050 -11.36127 -11.08792 -10.94312 -10.81783 -10.63615 -10.25452 -10.04088 -9.93357 -9.63927 -9.38782 -8.46374 -7.78264 -6.59502 -5.73662 -3.14626 3.39286 3.46108 3.48526 4.52294 4.86386 5.40707 5.42670 5.76750 5.90539 6.00068 6.07363 6.14151 6.25029 6.38502 6.42512 6.61034 6.69000 6.75301 6.87410 7.07014 7.20076 7.40260 7.74145 7.79362 7.87918 8.06691 8.49346 9.26477 9.90464 10.49757 11.34532 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.045163 B = 0.015237 C = 0.013158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.833561 B = 1837.227695 C = 2127.484073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.057 3.943 3 H 0.027 0.973 4 C 0.185 3.815 5 N -0.590 5.590 6 C -0.251 4.251 7 H 0.064 0.936 8 C 0.001 3.999 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.167 3.833 15 H 0.059 0.941 16 C -0.148 4.148 17 C 0.052 3.948 18 N -0.679 5.679 19 H 0.059 0.941 20 H 0.040 0.960 21 H 0.057 0.943 22 H 0.085 0.915 23 H 0.025 0.975 24 H 0.253 0.747 25 H 0.045 0.955 26 H 0.031 0.969 27 H 0.058 0.942 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 1.526 7.476 7.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.054 4.054 3 H 0.045 0.955 4 C 0.059 3.941 5 N -0.312 5.312 6 C -0.380 4.380 7 H 0.082 0.918 8 C -0.197 4.197 9 N -0.547 5.547 10 Si 0.730 3.270 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.059 3.941 15 H 0.077 0.923 16 C -0.207 4.207 17 C -0.079 4.079 18 N -0.310 5.310 19 H 0.078 0.922 20 H 0.059 0.941 21 H 0.076 0.924 22 H 0.103 0.897 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.757 0.905 6.976 7.251 hybrid contribution 0.550 1.375 -0.484 1.558 sum -1.207 2.281 6.493 6.987 Atomic orbital electron populations 1.21730 0.95628 1.01847 1.00431 1.22324 0.93796 0.95818 0.93484 0.95535 1.20855 0.83036 0.97355 0.92811 1.44225 1.01976 1.70908 1.14051 1.19181 0.96768 1.36543 0.85542 0.91798 1.25017 0.98386 0.99296 0.97004 1.70034 1.24639 1.41298 1.18717 0.86329 0.78799 0.80095 0.81748 1.21425 1.21583 1.20601 1.20697 0.95635 0.91308 0.86455 0.92310 1.22072 1.02019 0.97849 0.98798 1.22472 0.88101 0.98247 0.99118 1.60364 1.06676 1.59711 1.04255 0.92211 0.94068 0.92436 0.89731 0.95653 0.93698 0.93552 0.95037 0.92331 0.96040 0.92202 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.43 37.16 0.35 -1.96 16 2 C 0.06 1.14 3.18 -67.59 -0.21 0.93 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.19 4.59 4.30 -3.61 -0.02 4.58 16 5 N -0.59 -15.27 2.73 -164.21 -0.45 -15.72 16 6 C -0.25 -7.05 9.63 -15.06 -0.14 -7.20 16 7 H 0.06 1.77 7.88 -52.49 -0.41 1.35 16 8 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 9 N -0.90 -26.58 11.16 55.49 0.62 -25.96 16 10 Si 0.90 22.00 29.58 -169.99 -5.03 16.97 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.17 3.66 3.34 -67.25 -0.22 3.44 16 15 H 0.06 1.28 7.95 -51.93 -0.41 0.87 16 16 C -0.15 -3.08 9.21 37.16 0.34 -2.74 16 17 C 0.05 0.96 6.12 -3.47 -0.02 0.94 16 18 N -0.68 -12.44 5.97 -106.21 -0.63 -13.07 16 19 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.08 2.32 6.13 -51.93 -0.32 2.00 16 23 H 0.03 0.68 7.61 -51.93 -0.40 0.28 16 24 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.28 7.06 -51.93 -0.37 0.91 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.32 4.98 8.77 -39.29 -0.34 4.64 16 LS Contribution 239.75 15.07 3.61 3.61 Total: -1.00 -29.61 239.75 -6.66 -36.28 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.77 Total: -0.05 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.01 Total: -2.06 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.46 Total: -54.75 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.61 -6.66 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083125721.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.133 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds