Wall clock time and date at job start Mon Mar 30 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48554 * 2 1 4 4 C 1.53235 * 109.49067 * 239.94962 * 2 1 3 5 5 N 1.47078 * 108.51824 * 186.18179 * 4 2 1 6 6 C 1.36946 * 120.88073 * 231.18513 * 5 4 2 7 7 H 1.08000 * 119.99929 * 153.04730 * 6 5 4 8 8 C 1.38809 * 119.99745 * 333.32586 * 6 5 4 9 9 N 1.31612 * 120.00288 * 342.95459 * 8 6 5 10 10 Si 1.86798 * 119.99553 * 162.95042 * 8 6 5 11 11 H 1.48508 * 109.46890 * 90.00114 * 10 8 6 12 12 H 1.48506 * 109.47355 * 209.99720 * 10 8 6 13 13 H 1.48503 * 109.47509 * 330.00412 * 10 8 6 14 14 C 1.47078 * 118.23992 * 51.45707 * 5 4 2 15 15 H 1.09000 * 109.63297 * 188.82964 * 14 5 4 16 16 C 1.53006 * 109.62575 * 68.25146 * 14 5 4 17 17 C 1.53695 * 108.27683 * 308.48715 * 14 5 4 18 18 N 1.46891 * 109.51633 * 120.06702 * 2 1 3 19 19 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47279 * 300.05177 * 1 2 3 21 21 H 1.08998 * 109.47235 * 60.04985 * 1 2 3 22 22 H 1.08999 * 109.63227 * 66.47347 * 4 2 1 23 23 H 1.08997 * 109.62904 * 305.89356 * 4 2 1 24 24 H 0.97004 * 119.99820 * 180.02562 * 9 8 6 25 25 H 1.09000 * 109.47015 * 60.00077 * 16 14 5 26 26 H 1.08996 * 109.46647 * 180.02562 * 16 14 5 27 27 H 1.09004 * 109.47079 * 300.00224 * 16 14 5 28 28 H 1.09006 * 109.64671 * 294.07770 * 17 14 5 29 29 H 1.08995 * 109.42302 * 173.94564 * 17 14 5 30 30 H 1.00902 * 111.00562 * 307.23224 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2504 5 7 3.5043 -0.8422 -1.1559 6 6 4.3101 -0.4413 -2.1880 7 1 5.3215 -0.1187 -1.9895 8 6 3.8251 -0.4440 -3.4886 9 7 2.7413 -1.1292 -3.7854 10 14 4.7107 0.5250 -4.8176 11 1 5.7334 -0.3383 -5.4613 12 1 3.7304 0.9759 -5.8379 13 1 5.3725 1.7076 -4.2102 14 6 4.0785 -1.4087 0.0740 15 1 5.1618 -1.2887 0.0614 16 6 3.7231 -2.8938 0.1704 17 6 3.4872 -0.6530 1.2746 18 7 2.0208 -0.6937 1.1982 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5146 0.8895 21 1 -0.3633 0.5130 -0.8904 22 1 1.7772 -0.1499 -2.1389 23 1 1.5961 -1.7167 -1.3065 24 1 2.4027 -1.1314 -4.6944 25 1 4.1271 -3.4209 -0.6939 26 1 4.1494 -3.3108 1.0827 27 1 2.6392 -3.0074 0.1912 28 1 3.8236 0.3837 1.2568 29 1 3.8166 -1.1269 2.1991 30 1 1.6044 -0.3108 2.0338 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083125721.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:41 Heat of formation + Delta-G solvation = -1.708448 kcal Electronic energy + Delta-G solvation = -12016.032852 eV Core-core repulsion = 10038.721080 eV Total energy + Delta-G solvation = -1977.311771 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.69770 -35.64561 -34.24589 -32.29121 -29.94452 -27.53201 -26.14496 -24.49472 -22.31326 -19.93390 -18.71085 -17.27730 -16.46676 -15.74913 -15.52614 -15.16312 -14.95174 -14.30782 -13.82693 -13.17233 -13.03709 -12.92004 -12.66554 -12.53777 -12.47522 -12.12088 -11.89357 -11.65193 -11.51241 -11.18672 -10.58174 -9.33578 -8.63591 -7.86574 -5.31104 1.44554 1.45651 1.55657 2.50018 3.25876 3.38394 3.65029 4.23363 4.29391 4.46264 4.50796 4.55362 4.67622 4.84875 4.93365 4.98746 5.07741 5.17143 5.29943 5.36556 5.37166 5.54081 5.66434 5.77547 6.21602 6.39651 6.73198 7.14805 7.87323 8.41270 9.19237 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.045163 B = 0.015237 C = 0.013158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.833561 B = 1837.227695 C = 2127.484073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.067 3.933 3 H 0.017 0.983 4 C 0.195 3.805 5 N -0.609 5.609 6 C -0.265 4.265 7 H 0.064 0.936 8 C -0.051 4.051 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.272 1.272 14 C 0.153 3.847 15 H 0.057 0.943 16 C -0.135 4.135 17 C 0.060 3.940 18 N -0.677 5.677 19 H 0.056 0.944 20 H 0.074 0.926 21 H 0.054 0.946 22 H 0.050 0.950 23 H -0.004 1.004 24 H 0.250 0.750 25 H 0.018 0.982 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.017 0.983 29 H 0.097 0.903 30 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 2.126 9.116 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.045 4.045 3 H 0.035 0.965 4 C 0.069 3.931 5 N -0.332 5.332 6 C -0.395 4.395 7 H 0.082 0.918 8 C -0.246 4.246 9 N -0.580 5.580 10 Si 0.794 3.206 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.197 1.197 14 C 0.046 3.954 15 H 0.075 0.925 16 C -0.194 4.194 17 C -0.070 4.070 18 N -0.310 5.310 19 H 0.075 0.925 20 H 0.093 0.907 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.014 0.986 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.115 0.885 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.605 1.508 8.663 8.939 hybrid contribution 0.537 1.141 -0.943 1.574 sum -1.069 2.649 7.720 8.232 Atomic orbital electron populations 1.21657 0.92919 1.02180 1.02027 1.22052 0.95890 0.94347 0.92178 0.96530 1.20601 0.82820 0.95633 0.94045 1.44509 1.02264 1.71612 1.14774 1.19515 0.97113 1.36322 0.86593 0.91836 1.25779 0.99385 1.00379 0.99082 1.70195 1.26212 1.42749 1.18838 0.85296 0.77564 0.78814 0.78881 1.21105 1.21714 1.19672 1.20990 0.95811 0.92270 0.86302 0.92480 1.21914 1.01037 0.97018 0.99422 1.22355 0.88106 0.97767 0.98807 1.60246 1.06646 1.59590 1.04529 0.92491 0.90661 0.92672 0.93198 0.98619 0.94134 0.96323 0.91209 0.93692 0.96490 0.88498 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.43 71.98 0.68 -3.41 16 2 C 0.07 2.60 3.18 45.00 0.14 2.74 16 3 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 4 C 0.20 9.85 4.30 86.35 0.37 10.22 16 5 N -0.61 -31.87 2.73 -673.45 -1.84 -33.70 16 6 C -0.27 -15.14 9.63 84.03 0.81 -14.33 16 7 H 0.06 3.54 7.88 -2.91 -0.02 3.52 16 8 C -0.05 -2.93 4.93 84.86 0.42 -2.51 16 9 N -0.93 -56.68 11.16 21.65 0.24 -56.44 16 10 Si 0.97 45.89 29.58 68.60 2.03 47.92 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 14 C 0.15 6.56 3.34 45.12 0.15 6.71 16 15 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 16 C -0.13 -5.46 9.21 71.98 0.66 -4.79 16 17 C 0.06 2.08 6.12 86.54 0.53 2.61 16 18 N -0.68 -22.93 5.97 -489.93 -2.93 -25.86 16 19 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 20 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.05 2.84 6.13 -2.39 -0.01 2.82 16 23 H 0.00 -0.24 7.61 -2.39 -0.02 -0.25 16 24 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.04 1.92 7.06 -2.39 -0.02 1.91 16 28 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.34 9.28 8.77 -89.69 -0.79 8.50 16 Total: -1.00 -64.63 239.75 1.59 -63.04 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.32 Total: 7.80 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 3.76 Total: -2.76 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -4.52 Total: -116.00 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -64.63 1.59 -63.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083125721.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.333 kcal (2) G-P(sol) polarization free energy of solvation -64.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds