Wall clock time and date at job start Mon Mar 30 2020 02:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.49496 * 2 1 4 4 C 1.53245 * 109.49144 * 239.94945 * 2 1 3 5 5 N 1.47076 * 108.68046 * 186.08363 * 4 2 1 6 6 C 1.36941 * 120.87832 * 231.28092 * 5 4 2 7 7 H 1.08000 * 119.99986 * 151.49120 * 6 5 4 8 8 C 1.38815 * 120.00175 * 331.48541 * 6 5 4 9 9 N 1.31612 * 119.99723 * 344.63906 * 8 6 5 10 10 Si 1.86796 * 120.00103 * 164.63739 * 8 6 5 11 11 H 1.48508 * 109.46982 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47031 * 120.00190 * 10 8 6 13 13 H 1.48495 * 109.47114 * 240.00305 * 10 8 6 14 14 C 1.47470 * 117.98615 * 51.10606 * 5 4 2 15 15 H 1.08991 * 109.59593 * 68.66410 * 14 5 4 16 16 C 1.52998 * 109.55959 * 189.18985 * 14 5 4 17 17 C 1.53246 * 108.61963 * 308.91728 * 14 5 4 18 18 N 1.46893 * 109.51978 * 120.06766 * 2 1 3 19 19 H 1.08999 * 109.46796 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47092 * 300.05060 * 1 2 3 21 21 H 1.08998 * 109.47608 * 60.05261 * 1 2 3 22 22 H 1.09001 * 109.62766 * 305.88882 * 4 2 1 23 23 H 1.09004 * 109.62616 * 66.27876 * 4 2 1 24 24 H 0.97003 * 119.99915 * 179.97438 * 9 8 6 25 25 H 1.09004 * 109.47260 * 179.11294 * 16 14 5 26 26 H 1.09001 * 109.47287 * 299.10765 * 16 14 5 27 27 H 1.09000 * 109.47315 * 59.11045 * 16 14 5 28 28 H 1.08998 * 109.49267 * 293.88644 * 17 14 5 29 29 H 1.08998 * 109.50761 * 173.82617 * 17 14 5 30 30 H 1.00905 * 110.99581 * 58.92912 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2504 5 7 3.5045 -0.8421 -1.1608 6 6 4.3070 -0.4396 -2.1948 7 1 5.3105 -0.0933 -1.9964 8 6 3.8307 -0.4768 -3.4982 9 7 2.7467 -1.1667 -3.7831 10 14 4.7281 0.4522 -4.8475 11 1 5.9095 1.1433 -4.2711 12 1 5.1753 -0.5029 -5.8930 13 1 3.8135 1.4544 -5.4511 14 6 4.0788 -1.4031 0.0763 15 1 3.8293 -2.4617 0.1477 16 6 5.5987 -1.2290 0.0603 17 6 3.4872 -0.6529 1.2744 18 7 2.0208 -0.6937 1.1982 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5146 0.8895 21 1 -0.3634 0.5130 -0.8904 22 1 1.5961 -1.7168 -1.3065 23 1 1.7741 -0.1516 -2.1392 24 1 2.4136 -1.1924 -4.6938 25 1 6.0201 -1.6299 0.9822 26 1 6.0168 -1.7635 -0.7927 27 1 5.8422 -0.1695 -0.0199 28 1 3.8237 0.3837 1.2567 29 1 3.8167 -1.1265 2.1992 30 1 1.6833 -1.6441 1.2294 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083125723.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:43 Heat of formation + Delta-G solvation = -3.854525 kcal Electronic energy + Delta-G solvation = -11989.408507 eV Core-core repulsion = 10012.003674 eV Total energy + Delta-G solvation = -1977.404832 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.83862 -35.70847 -34.41565 -32.19692 -30.02959 -27.54455 -25.76578 -24.48166 -21.90896 -21.29687 -18.44360 -17.12048 -16.12741 -15.98092 -15.60910 -15.33964 -14.97419 -14.27809 -13.61512 -13.25118 -13.01300 -12.85517 -12.66155 -12.48759 -12.36617 -12.14176 -12.11034 -11.69334 -11.61610 -11.51020 -10.61146 -9.54829 -8.53868 -7.83997 -5.34207 1.42505 1.44302 1.54559 2.47660 3.25739 3.40467 3.57256 4.17798 4.27022 4.43093 4.49006 4.54460 4.63599 4.74794 4.91462 4.97708 5.06481 5.10155 5.28169 5.32132 5.38515 5.48236 5.62424 5.65847 6.16329 6.37311 6.56422 7.11865 7.82850 8.36049 9.18344 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.041359 B = 0.016344 C = 0.012726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.828836 B = 1712.713641 C = 2199.688798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.065 3.935 3 H 0.059 0.941 4 C 0.155 3.845 5 N -0.612 5.612 6 C -0.252 4.252 7 H 0.073 0.927 8 C -0.056 4.056 9 N -0.939 5.939 10 Si 0.965 3.035 11 H -0.265 1.265 12 H -0.293 1.293 13 H -0.291 1.291 14 C 0.119 3.881 15 H 0.013 0.987 16 C -0.126 4.126 17 C 0.057 3.943 18 N -0.674 5.674 19 H 0.053 0.947 20 H 0.073 0.927 21 H 0.055 0.945 22 H -0.008 1.008 23 H 0.051 0.949 24 H 0.248 0.752 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 1.496 8.245 8.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.046 4.046 3 H 0.077 0.923 4 C 0.028 3.972 5 N -0.336 5.336 6 C -0.382 4.382 7 H 0.091 0.909 8 C -0.251 4.251 9 N -0.585 5.585 10 Si 0.793 3.207 11 H -0.190 1.190 12 H -0.220 1.220 13 H -0.217 1.217 14 C 0.013 3.987 15 H 0.030 0.970 16 C -0.184 4.184 17 C -0.074 4.074 18 N -0.303 5.303 19 H 0.072 0.928 20 H 0.092 0.908 21 H 0.074 0.926 22 H 0.010 0.990 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.280 2.039 8.527 8.772 hybrid contribution 0.525 -0.486 -2.005 2.129 sum 0.245 1.553 6.522 6.709 Atomic orbital electron populations 1.21618 0.92972 1.01969 1.01988 1.22042 0.95944 0.97406 0.89211 0.92287 1.21286 0.83426 0.95816 0.96682 1.44583 1.02022 1.72553 1.14477 1.19544 0.98128 1.34813 0.85724 0.90899 1.25843 0.99442 1.00367 0.99437 1.70194 1.26414 1.43207 1.18721 0.85237 0.78248 0.77972 0.79228 1.18971 1.22047 1.21749 1.21579 0.94722 0.94362 0.88076 0.96982 1.21657 0.94338 1.01218 1.01159 1.22412 0.87568 1.00338 0.97069 1.60883 1.09557 1.20951 1.38865 0.92754 0.90785 0.92604 0.99042 0.93054 0.94329 0.90173 0.94413 0.93255 0.92137 0.88551 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 9.49 71.98 0.68 -3.37 16 2 C 0.07 2.55 3.17 45.00 0.14 2.69 16 3 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 4 C 0.16 7.65 4.64 86.35 0.40 8.05 16 5 N -0.61 -31.20 3.05 -673.35 -2.05 -33.25 16 6 C -0.25 -13.96 8.70 84.03 0.73 -13.23 16 7 H 0.07 3.91 6.25 -2.91 -0.02 3.90 16 8 C -0.06 -3.19 4.96 84.86 0.42 -2.77 16 9 N -0.94 -56.65 11.19 21.65 0.24 -56.41 16 10 Si 0.96 45.64 29.58 68.60 2.03 47.67 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 14 C 0.12 4.93 3.64 44.89 0.16 5.09 16 15 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 16 C -0.13 -4.60 7.95 71.98 0.57 -4.03 16 17 C 0.06 1.96 6.00 86.39 0.52 2.47 16 18 N -0.67 -23.28 6.48 -490.73 -3.18 -26.47 16 19 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 20 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 21 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 22 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 23 H 0.05 2.88 6.21 -2.38 -0.01 2.86 16 24 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.08 2.27 8.14 -2.38 -0.02 2.26 16 26 H 0.04 1.52 7.61 -2.39 -0.02 1.50 16 27 H 0.05 1.83 7.54 -2.39 -0.02 1.81 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.34 11.10 8.78 -89.69 -0.79 10.31 16 Total: -1.00 -62.85 238.14 0.99 -61.87 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.32 Total: 11.69 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 3.63 Total: -5.09 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -4.99 Total: -116.13 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -62.85 0.99 -61.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083125723.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.011 kcal (2) G-P(sol) polarization free energy of solvation -62.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds