Wall clock time and date at job start Mon Mar 30 2020 02:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.49351 * 2 1 4 4 C 1.53234 * 109.49587 * 120.05925 * 2 1 3 5 5 N 1.47084 * 108.52040 * 173.81458 * 4 2 1 6 6 C 1.36942 * 120.87750 * 128.81575 * 5 4 2 7 7 H 1.07996 * 119.99600 * 209.97087 * 6 5 4 8 8 C 1.38807 * 120.00115 * 29.97322 * 6 5 4 9 9 N 1.31621 * 120.00013 * 198.64877 * 8 6 5 10 10 Si 1.86800 * 120.00221 * 18.36301 * 8 6 5 11 11 H 1.48493 * 109.47422 * 270.28000 * 10 8 6 12 12 H 1.48504 * 109.46801 * 30.28196 * 10 8 6 13 13 H 1.48500 * 109.47058 * 150.27849 * 10 8 6 14 14 C 1.47074 * 118.24042 * 309.08791 * 5 4 2 15 15 H 1.08994 * 109.63254 * 170.61765 * 14 5 4 16 16 C 1.52998 * 109.62746 * 291.20309 * 14 5 4 17 17 C 1.52787 * 108.76313 * 50.84873 * 14 5 4 18 18 N 1.46894 * 109.42572 * 306.42505 * 17 14 5 19 19 H 1.09002 * 109.46851 * 299.93904 * 1 2 3 20 20 H 1.08990 * 109.47301 * 59.94165 * 1 2 3 21 21 H 1.09009 * 109.46949 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.62948 * 54.10464 * 4 2 1 23 23 H 1.09001 * 109.78869 * 293.61822 * 4 2 1 24 24 H 0.97003 * 119.99537 * 354.64966 * 9 8 6 25 25 H 1.09003 * 109.47124 * 59.99965 * 16 14 5 26 26 H 1.09000 * 109.46832 * 179.97438 * 16 14 5 27 27 H 1.08998 * 109.47346 * 299.99522 * 16 14 5 28 28 H 1.09005 * 109.56894 * 186.36966 * 17 14 5 29 29 H 1.09004 * 109.33799 * 66.34280 * 17 14 5 30 30 H 1.00898 * 111.00410 * 298.81456 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7235 1.2502 5 7 3.5044 -0.8424 1.1556 6 6 4.3103 -0.4416 2.1877 7 1 5.3048 -0.0730 1.9844 8 6 3.8489 -0.5093 3.4951 9 7 4.4398 0.1928 4.4387 10 14 2.3843 -1.5904 3.9140 11 1 1.1321 -0.8055 3.7693 12 1 2.3485 -2.7542 2.9923 13 1 2.5081 -2.0711 5.3136 14 6 4.0791 -1.3974 -0.0792 15 1 5.1614 -1.2694 -0.0692 16 6 3.7344 -2.8844 -0.1834 17 6 3.4871 -0.6528 -1.2748 18 7 2.0207 -0.6936 -1.1984 19 1 -0.3633 0.5129 0.8906 20 1 -0.3633 0.5147 -0.8894 21 1 -0.3633 -1.0278 -0.0005 22 1 1.5962 -1.7168 1.3062 23 1 1.7772 -0.1531 2.1407 24 1 5.2440 0.6962 4.2369 25 1 2.6513 -3.0059 -0.2018 26 1 4.1611 -3.2930 -1.0994 27 1 4.1448 -3.4137 0.6765 28 1 3.8165 -1.1266 -2.1995 29 1 3.8235 0.3839 -1.2570 30 1 1.6832 -1.6440 -1.2298 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083125726.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:49 Heat of formation + Delta-G solvation = 16.714676 kcal Electronic energy + Delta-G solvation = -12133.217511 eV Core-core repulsion = 10156.704627 eV Total energy + Delta-G solvation = -1976.512885 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.63844 -33.85977 -32.78973 -30.95362 -28.49690 -25.69918 -24.74378 -22.62510 -20.91733 -18.85198 -17.49409 -15.19430 -14.79086 -14.54271 -14.33606 -13.63087 -13.38389 -12.73135 -12.37735 -12.18482 -11.81493 -11.31883 -11.29460 -11.00708 -10.59978 -10.46620 -10.21201 -10.01274 -9.71216 -9.14601 -8.71748 -7.95407 -6.96628 -6.22590 -3.35456 3.37437 3.50771 3.66638 4.56010 4.71021 4.91932 5.35857 5.52527 5.66397 5.71965 5.74076 5.89789 6.02092 6.09516 6.12726 6.23983 6.32345 6.43822 6.47921 6.57050 6.65226 6.72889 6.91784 7.53272 7.86351 8.01303 8.43188 9.04853 9.58464 10.19536 11.13145 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.039667 B = 0.018828 C = 0.015936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.702157 B = 1486.769720 C = 1756.635873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 H 0.079 0.921 4 C 0.095 3.905 5 N -0.601 5.601 6 C -0.340 4.340 7 H 0.064 0.936 8 C -0.016 4.016 9 N -0.923 5.923 10 Si 1.068 2.932 11 H -0.294 1.294 12 H -0.287 1.287 13 H -0.300 1.300 14 C 0.128 3.872 15 H 0.068 0.932 16 C -0.163 4.163 17 C 0.049 3.951 18 N -0.681 5.681 19 H 0.058 0.942 20 H 0.057 0.943 21 H 0.049 0.951 22 H 0.024 0.976 23 H 0.075 0.925 24 H 0.263 0.737 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -3.377 -9.279 11.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 H 0.097 0.903 4 C -0.032 4.032 5 N -0.324 5.324 6 C -0.469 4.469 7 H 0.082 0.918 8 C -0.217 4.217 9 N -0.563 5.563 10 Si 0.901 3.099 11 H -0.222 1.222 12 H -0.213 1.213 13 H -0.228 1.228 14 C 0.020 3.980 15 H 0.086 0.914 16 C -0.222 4.222 17 C -0.082 4.082 18 N -0.311 5.311 19 H 0.077 0.923 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.042 0.958 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.592 -3.245 -8.439 11.189 hybrid contribution 1.343 -0.265 -0.469 1.447 sum -5.248 -3.510 -8.909 10.919 Atomic orbital electron populations 1.21765 0.95250 1.01430 1.01550 1.22037 0.94044 0.98949 0.89682 0.90289 1.22062 0.85615 0.97457 0.98070 1.44401 1.00529 1.72296 1.15208 1.20220 1.00034 1.40652 0.85982 0.91810 1.26228 1.04665 0.99435 0.91373 1.70901 1.20349 1.29157 1.35868 0.83721 0.74903 0.76619 0.74704 1.22178 1.21295 1.22799 1.21211 0.97827 0.91046 0.87947 0.91393 1.22241 1.00558 0.98968 1.00448 1.22301 0.87846 1.00872 0.97209 1.60842 1.09672 1.20809 1.39754 0.92308 0.92369 0.93191 0.95819 0.90678 0.92721 0.93860 0.93707 0.92673 0.91617 0.91405 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.49 37.16 0.35 -1.80 16 2 C 0.06 1.19 3.17 -67.59 -0.21 0.98 16 3 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 4 C 0.09 2.09 3.23 -3.60 -0.01 2.08 16 5 N -0.60 -14.60 2.47 -164.76 -0.41 -15.01 16 6 C -0.34 -9.73 9.92 -15.06 -0.15 -9.88 16 7 H 0.06 1.95 8.06 -52.49 -0.42 1.53 16 8 C -0.02 -0.46 5.25 -17.43 -0.09 -0.55 16 9 N -0.92 -29.04 13.70 55.49 0.76 -28.28 16 10 Si 1.07 27.02 24.68 -169.99 -4.19 22.82 16 11 H -0.29 -6.98 6.55 56.52 0.37 -6.61 16 12 H -0.29 -6.96 6.72 56.52 0.38 -6.58 16 13 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 14 C 0.13 2.60 3.30 -67.73 -0.22 2.38 16 15 H 0.07 1.43 7.95 -51.93 -0.41 1.01 16 16 C -0.16 -2.93 9.10 37.16 0.34 -2.59 16 17 C 0.05 0.85 6.12 -3.94 -0.02 0.83 16 18 N -0.68 -11.62 6.47 -106.71 -0.69 -12.31 16 19 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 20 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 22 H 0.02 0.52 6.43 -51.93 -0.33 0.19 16 23 H 0.08 1.82 4.85 -51.93 -0.25 1.56 16 24 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 25 H 0.04 0.75 6.12 -51.93 -0.32 0.44 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.33 5.31 7.19 -39.29 -0.28 5.02 16 LS Contribution 231.75 15.07 3.49 3.49 Total: -1.00 -30.48 231.75 -5.67 -36.15 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.61 Total: 1.68 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.02 Total: -8.55 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.34 Total: -55.59 kcal Atomic # 14 Polarization: 27.02 SS G_CDS: -4.19 Total: 22.82 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.48 -5.67 -36.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083125726.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.868 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds