Wall clock time and date at job start Mon Mar 30 2020 02:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.78659 * 2 1 4 4 C 1.53242 * 109.63112 * 239.51517 * 2 1 3 5 5 N 1.46894 * 109.34069 * 294.12452 * 4 2 1 6 6 C 1.46906 * 111.26503 * 296.89306 * 5 4 2 7 7 C 1.52777 * 109.42659 * 62.96421 * 6 5 4 8 8 N 1.47078 * 108.76474 * 306.42701 * 7 6 5 9 9 C 1.36937 * 120.88309 * 231.12224 * 8 7 6 10 10 H 1.07993 * 120.00394 * 150.68949 * 9 8 7 11 11 C 1.38819 * 119.99685 * 330.41064 * 9 8 7 12 12 N 1.31620 * 120.00120 * 347.63233 * 11 9 8 13 13 Si 1.86799 * 119.99918 * 167.62795 * 11 9 8 14 14 H 1.48506 * 109.46834 * 90.00419 * 13 11 9 15 15 H 1.48492 * 109.47169 * 210.00227 * 13 11 9 16 16 H 1.48496 * 109.47435 * 330.00696 * 13 11 9 17 17 H 1.09003 * 109.46741 * 299.51586 * 1 2 3 18 18 H 1.09000 * 109.46839 * 59.51117 * 1 2 3 19 19 H 1.08995 * 109.46811 * 179.51176 * 1 2 3 20 20 H 1.08995 * 109.47364 * 180.48422 * 3 2 1 21 21 H 1.09003 * 109.47045 * 300.48743 * 3 2 1 22 22 H 1.09002 * 109.47096 * 60.48495 * 3 2 1 23 23 H 1.09008 * 109.48702 * 54.07651 * 4 2 1 24 24 H 1.08995 * 109.49854 * 174.12856 * 4 2 1 25 25 H 1.00898 * 111.00417 * 61.03629 * 5 4 2 26 26 H 1.09002 * 109.49411 * 183.06495 * 6 5 4 27 27 H 1.09005 * 109.48831 * 303.11496 * 6 5 4 28 28 H 1.08996 * 109.56100 * 186.61071 * 7 6 5 29 29 H 1.08998 * 109.45791 * 66.17892 * 7 6 5 30 30 H 0.96996 * 120.00066 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0480 1.4397 0.0000 4 6 2.0449 -0.7322 -1.2438 5 7 1.6747 -2.1514 -1.1610 6 6 2.3148 -2.8026 -0.0102 7 6 1.8166 -2.1563 1.2814 8 7 2.0242 -0.7029 1.1938 9 6 2.6655 -0.0229 2.1945 10 1 3.2251 0.8722 1.9667 11 6 2.5914 -0.4809 3.5029 12 7 1.7200 -1.4131 3.8255 13 14 3.7286 0.2257 4.8056 14 1 3.0815 1.4006 5.4429 15 1 4.0033 -0.8076 5.8360 16 1 5.0049 0.6459 4.1734 17 1 -0.3633 0.5063 0.8943 18 1 -0.3633 0.5214 -0.8856 19 1 -0.3633 -1.0276 -0.0088 20 1 3.1379 1.4338 -0.0087 21 1 1.6804 1.9581 -0.8856 22 1 1.6946 1.9530 0.8943 23 1 1.5992 -0.2916 -2.1357 24 1 3.1297 -0.6413 -1.2965 25 1 0.6724 -2.2623 -1.1278 26 1 2.0650 -3.8636 -0.0073 27 1 3.3961 -2.6837 -0.0801 28 1 2.3748 -2.5555 2.1282 29 1 0.7546 -2.3675 1.4069 30 1 1.6685 -1.7334 4.7396 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083842705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:50 Heat of formation + Delta-G solvation = 0.584188 kcal Electronic energy + Delta-G solvation = -12200.687563 eV Core-core repulsion = 10223.475208 eV Total energy + Delta-G solvation = -1977.212355 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.12536 -35.38779 -34.52385 -32.05070 -28.94901 -27.98461 -26.60530 -24.46994 -22.66377 -20.20033 -18.33610 -17.11604 -16.22584 -15.81439 -15.69215 -15.28062 -14.82937 -14.17343 -13.73494 -13.19752 -12.95410 -12.90844 -12.67265 -12.54911 -12.30475 -12.13529 -12.11784 -11.73766 -11.51228 -11.41436 -10.55906 -9.50957 -8.47990 -7.80203 -5.31128 1.43567 1.45015 1.53912 2.49409 3.30404 3.47148 3.60395 4.19077 4.27489 4.42100 4.49878 4.70162 4.72230 4.85547 4.86175 5.01082 5.05705 5.13700 5.16258 5.30530 5.50950 5.54947 5.66380 5.70975 6.16204 6.42199 6.57557 7.16918 7.89421 8.40774 9.21330 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.048715 B = 0.016164 C = 0.014186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.632666 B = 1731.815709 C = 1973.370555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.137 3.863 3 C -0.123 4.123 4 C 0.061 3.939 5 N -0.679 5.679 6 C 0.045 3.955 7 C 0.148 3.852 8 N -0.600 5.600 9 C -0.248 4.248 10 H 0.071 0.929 11 C -0.055 4.055 12 N -0.938 5.938 13 Si 0.963 3.037 14 H -0.287 1.287 15 H -0.295 1.295 16 H -0.270 1.270 17 H 0.024 0.976 18 H 0.076 0.924 19 H 0.038 0.962 20 H 0.045 0.955 21 H 0.078 0.922 22 H 0.037 0.963 23 H 0.094 0.906 24 H 0.057 0.943 25 H 0.338 0.662 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.052 0.948 29 H -0.006 1.006 30 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 1.619 -8.431 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.049 3.951 3 C -0.181 4.181 4 C -0.070 4.070 5 N -0.307 5.307 6 C -0.086 4.086 7 C 0.021 3.979 8 N -0.324 5.324 9 C -0.378 4.378 10 H 0.089 0.911 11 C -0.250 4.250 12 N -0.585 5.585 13 Si 0.791 3.209 14 H -0.214 1.214 15 H -0.222 1.222 16 H -0.195 1.195 17 H 0.043 0.957 18 H 0.095 0.905 19 H 0.057 0.943 20 H 0.065 0.935 21 H 0.097 0.903 22 H 0.056 0.944 23 H 0.112 0.888 24 H 0.076 0.924 25 H 0.156 0.844 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.012 0.988 30 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.333 1.344 -8.741 8.850 hybrid contribution -0.190 0.509 2.141 2.209 sum 0.143 1.853 -6.600 6.857 Atomic orbital electron populations 1.22093 0.97404 1.00287 1.00497 1.21028 0.92420 0.93221 0.88455 1.21702 1.00292 0.94999 1.01069 1.22375 1.00193 0.87776 0.96631 1.60837 1.14144 1.13876 1.41891 1.22375 0.98740 0.97937 0.89561 1.21130 0.96155 0.84315 0.96348 1.44403 1.66567 1.02588 1.18854 1.19489 1.22769 1.09017 0.86566 0.91103 1.25831 0.99693 1.00406 0.99058 1.70163 1.36992 1.33585 1.17791 0.85341 0.79232 0.77191 0.79113 1.21400 1.22179 1.19538 0.95665 0.90550 0.94332 0.93547 0.90332 0.94408 0.88766 0.92399 0.84437 0.90150 0.92572 0.92972 0.98772 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 8.41 71.98 0.61 -4.70 16 2 C 0.14 5.41 1.04 3.58 0.00 5.41 16 3 C -0.12 -4.43 7.25 71.98 0.52 -3.91 16 4 C 0.06 2.07 5.45 86.39 0.47 2.54 16 5 N -0.68 -23.23 6.84 -513.84 -3.51 -26.74 16 6 C 0.04 1.74 6.68 86.23 0.58 2.32 16 7 C 0.15 7.17 4.92 86.19 0.42 7.60 16 8 N -0.60 -29.67 2.73 -652.27 -1.78 -31.45 16 9 C -0.25 -13.53 8.66 84.04 0.73 -12.80 16 10 H 0.07 3.76 6.23 -2.91 -0.02 3.74 16 11 C -0.06 -3.11 5.03 84.86 0.43 -2.68 16 12 N -0.94 -56.15 11.09 21.65 0.24 -55.91 16 13 Si 0.96 45.54 29.57 68.60 2.03 47.56 16 14 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 15 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 18 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 19 H 0.04 1.43 6.12 -2.39 -0.01 1.42 16 20 H 0.05 1.71 7.58 -2.39 -0.02 1.69 16 21 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.04 1.51 7.55 -2.39 -0.02 1.49 16 23 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.34 10.97 7.24 -89.70 -0.65 10.32 16 26 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.05 2.90 6.20 -2.39 -0.01 2.88 16 29 H -0.01 -0.30 7.65 -2.39 -0.02 -0.32 16 30 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -61.71 232.85 1.19 -60.52 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.46 Total: 12.25 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 3.76 Total: -6.22 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -5.05 Total: -114.10 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -61.71 1.19 -60.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083842705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.102 kcal (2) G-P(sol) polarization free energy of solvation -61.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds