Wall clock time and date at job start Mon Mar 30 2020 01:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47484 * 2 1 4 4 O 1.42899 * 109.47337 * 180.02562 * 3 2 1 5 5 C 1.42903 * 113.99839 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46724 * 179.97438 * 5 4 3 7 7 C 1.50704 * 115.55162 * 294.87044 * 6 5 4 8 8 H 1.08001 * 119.99758 * 99.48182 * 7 6 5 9 9 C 1.37877 * 120.00036 * 279.20579 * 7 6 5 10 10 N 1.31519 * 120.00052 * 355.32964 * 9 7 6 11 11 Si 1.86794 * 120.00166 * 175.32718 * 9 7 6 12 12 H 1.48508 * 109.47258 * 90.00045 * 11 9 7 13 13 H 1.48496 * 109.47385 * 210.00149 * 11 9 7 14 14 H 1.48500 * 109.47259 * 330.00493 * 11 9 7 15 15 C 1.53001 * 117.51877 * 80.57710 * 6 5 4 16 16 C 1.53000 * 60.00051 * 107.48042 * 15 6 5 17 17 H 1.09000 * 109.47298 * 59.99210 * 1 2 3 18 18 H 1.08997 * 109.47288 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.46678 * 299.99695 * 1 2 3 20 20 H 1.09006 * 109.46819 * 240.00449 * 2 1 3 21 21 H 1.09000 * 109.47298 * 120.00790 * 2 1 3 22 22 H 1.09009 * 109.47189 * 60.00186 * 3 2 1 23 23 H 1.09000 * 109.47498 * 300.00668 * 3 2 1 24 24 H 1.09000 * 109.47216 * 60.00192 * 5 4 3 25 25 H 1.09000 * 109.47378 * 299.99686 * 5 4 3 26 26 H 0.96998 * 119.99868 * 179.97438 * 10 9 7 27 27 H 1.08999 * 117.49791 * 214.96725 * 15 6 5 28 28 H 1.08994 * 117.49636 * 359.97438 * 15 6 5 29 29 H 1.09008 * 117.49526 * 252.51166 * 16 15 6 30 30 H 1.09001 * 117.52299 * 107.48381 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5755 2.6270 -0.0001 7 6 6.1783 2.0050 1.2332 8 1 6.4690 0.9649 1.2264 9 6 6.3641 2.7654 2.3682 10 7 6.1013 4.0539 2.3469 11 14 6.9888 1.9655 3.9364 12 1 8.4728 2.0159 3.9605 13 1 6.4496 2.6942 5.1126 14 1 6.5408 0.5505 3.9827 15 6 6.2627 2.3502 -1.3389 16 6 6.3719 3.7336 -0.6945 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3632 0.5138 0.8900 20 1 1.8933 -0.5138 -0.8901 21 1 1.8934 -0.5139 0.8899 22 1 1.6768 1.9563 0.8901 23 1 1.6767 1.9564 -0.8899 24 1 3.7291 3.2883 0.8904 25 1 3.7284 3.2893 -0.8896 26 1 6.2316 4.5887 3.1455 27 1 7.1507 1.7183 -1.3276 28 1 5.6281 2.2538 -2.2198 29 1 5.8091 4.5476 -1.1517 30 1 7.3316 4.0121 -0.2591 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:21 Heat of formation + Delta-G solvation = -39.079832 kcal Electronic energy + Delta-G solvation = -11311.588532 eV Core-core repulsion = 9300.363465 eV Total energy + Delta-G solvation = -2011.225067 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.55242 -35.77218 -33.06187 -31.85354 -26.82667 -25.40733 -24.36309 -21.20330 -20.94869 -19.04086 -16.19301 -15.55258 -15.42480 -14.56676 -14.16257 -13.76538 -13.23849 -12.74785 -11.97977 -11.76563 -11.61919 -11.25843 -10.89235 -10.82037 -10.52062 -10.41543 -10.38528 -10.10530 -9.34158 -9.01878 -8.56818 -8.33506 -8.02477 -5.96903 -4.00111 3.33781 3.40187 3.46056 4.42849 4.49426 5.24033 5.32845 5.33009 5.46261 5.67983 5.77429 5.89603 6.00131 6.11402 6.22249 6.36794 6.43623 6.46995 6.50998 6.77409 6.79830 6.88063 7.14792 7.50581 7.58104 7.96049 8.24843 8.54631 9.00036 9.63819 11.12529 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.034293 B = 0.012291 C = 0.010017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.307692 B = 2277.481101 C = 2794.562604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.060 3.940 4 O -0.375 6.375 5 C 0.110 3.890 6 C 0.042 3.958 7 C -0.479 4.479 8 H 0.060 0.940 9 C 0.066 3.934 10 N -0.886 5.886 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.206 4.206 16 C -0.151 4.151 17 H 0.052 0.948 18 H 0.056 0.944 19 H 0.054 0.946 20 H 0.066 0.934 21 H 0.069 0.931 22 H 0.039 0.961 23 H 0.034 0.966 24 H 0.051 0.949 25 H 0.014 0.986 26 H 0.258 0.742 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.197 -3.430 -3.629 8.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.018 4.018 4 O -0.294 6.294 5 C 0.033 3.967 6 C 0.042 3.958 7 C -0.517 4.517 8 H 0.078 0.922 9 C -0.136 4.136 10 N -0.524 5.524 11 Si 0.718 3.282 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.243 4.243 16 C -0.189 4.189 17 H 0.071 0.929 18 H 0.075 0.925 19 H 0.073 0.927 20 H 0.085 0.915 21 H 0.088 0.912 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.084 -3.428 -3.503 8.614 hybrid contribution 0.130 0.042 0.896 0.907 sum -6.954 -3.386 -2.607 8.162 Atomic orbital electron populations 1.21693 0.95581 1.01541 1.01688 1.21431 0.94859 0.96620 1.03105 1.22375 0.83863 0.96554 0.98967 1.87947 1.16725 1.29593 1.95100 1.22128 0.94680 0.82461 0.97402 1.18745 0.87906 0.98375 0.90771 1.20400 1.40059 0.96274 0.94988 0.92180 1.24988 0.95246 0.94733 0.98643 1.70013 1.48797 1.05001 1.28551 0.86615 0.78834 0.79703 0.83002 1.20748 1.21267 1.19747 1.22920 1.03251 1.00508 0.97649 1.22532 1.02526 0.90154 1.03695 0.92887 0.92539 0.92729 0.91529 0.91192 0.94260 0.94785 0.93113 0.96801 0.93187 0.90462 0.91705 0.92030 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.12 -1.83 6.30 -26.73 -0.17 -2.00 16 3 C 0.06 1.07 5.94 37.16 0.22 1.29 16 4 O -0.37 -8.66 10.27 -35.23 -0.36 -9.02 16 5 C 0.11 2.66 5.76 37.16 0.21 2.87 16 6 C 0.04 1.11 1.61 -155.66 -0.25 0.86 16 7 C -0.48 -13.73 8.75 -34.44 -0.30 -14.03 16 8 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 9 C 0.07 1.86 5.44 -17.82 -0.10 1.76 16 10 N -0.89 -25.62 12.86 55.43 0.71 -24.91 16 11 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 C -0.21 -4.78 9.96 -26.73 -0.27 -5.05 16 16 C -0.15 -3.69 9.39 -26.73 -0.25 -3.94 16 17 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 18 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.01 0.31 8.09 -51.93 -0.42 -0.11 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.06 1.39 8.14 -51.92 -0.42 0.97 16 30 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 258.97 15.07 3.90 3.90 Total: -1.00 -29.63 258.97 -6.34 -35.97 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.04 Total: -3.11 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -0.53 Total: -19.57 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.71 Total: -24.91 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.36 Total: -9.02 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.63 -6.34 -35.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.114 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds