Wall clock time and date at job start Mon Mar 30 2020 01:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47484 * 2 1 4 4 O 1.42899 * 109.47337 * 180.02562 * 3 2 1 5 5 C 1.42903 * 113.99839 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46724 * 179.97438 * 5 4 3 7 7 C 1.50704 * 115.55162 * 294.87044 * 6 5 4 8 8 H 1.08001 * 119.99758 * 99.48182 * 7 6 5 9 9 C 1.37877 * 120.00036 * 279.20579 * 7 6 5 10 10 N 1.31519 * 120.00052 * 355.32964 * 9 7 6 11 11 Si 1.86794 * 120.00166 * 175.32718 * 9 7 6 12 12 H 1.48508 * 109.47258 * 90.00045 * 11 9 7 13 13 H 1.48496 * 109.47385 * 210.00149 * 11 9 7 14 14 H 1.48500 * 109.47259 * 330.00493 * 11 9 7 15 15 C 1.53001 * 117.51877 * 80.57710 * 6 5 4 16 16 C 1.53000 * 60.00051 * 107.48042 * 15 6 5 17 17 H 1.09000 * 109.47298 * 59.99210 * 1 2 3 18 18 H 1.08997 * 109.47288 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.46678 * 299.99695 * 1 2 3 20 20 H 1.09006 * 109.46819 * 240.00449 * 2 1 3 21 21 H 1.09000 * 109.47298 * 120.00790 * 2 1 3 22 22 H 1.09009 * 109.47189 * 60.00186 * 3 2 1 23 23 H 1.09000 * 109.47498 * 300.00668 * 3 2 1 24 24 H 1.09000 * 109.47216 * 60.00192 * 5 4 3 25 25 H 1.09000 * 109.47378 * 299.99686 * 5 4 3 26 26 H 0.96998 * 119.99868 * 179.97438 * 10 9 7 27 27 H 1.08999 * 117.49791 * 214.96725 * 15 6 5 28 28 H 1.08994 * 117.49636 * 359.97438 * 15 6 5 29 29 H 1.09008 * 117.49526 * 252.51166 * 16 15 6 30 30 H 1.09001 * 117.52299 * 107.48381 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5755 2.6270 -0.0001 7 6 6.1783 2.0050 1.2332 8 1 6.4690 0.9649 1.2264 9 6 6.3641 2.7654 2.3682 10 7 6.1013 4.0539 2.3469 11 14 6.9888 1.9655 3.9364 12 1 8.4728 2.0159 3.9605 13 1 6.4496 2.6942 5.1126 14 1 6.5408 0.5505 3.9827 15 6 6.2627 2.3502 -1.3389 16 6 6.3719 3.7336 -0.6945 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3632 0.5138 0.8900 20 1 1.8933 -0.5138 -0.8901 21 1 1.8934 -0.5139 0.8899 22 1 1.6768 1.9563 0.8901 23 1 1.6767 1.9564 -0.8899 24 1 3.7291 3.2883 0.8904 25 1 3.7284 3.2893 -0.8896 26 1 6.2316 4.5887 3.1455 27 1 7.1507 1.7183 -1.3276 28 1 5.6281 2.2538 -2.2198 29 1 5.8091 4.5476 -1.1517 30 1 7.3316 4.0121 -0.2591 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:21 Heat of formation + Delta-G solvation = -56.350738 kcal Electronic energy + Delta-G solvation = -11312.337455 eV Core-core repulsion = 9300.363465 eV Total energy + Delta-G solvation = -2011.973990 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.32289 -37.54629 -34.35288 -33.97704 -28.50547 -27.33938 -25.99260 -22.91807 -22.38252 -21.02393 -18.19902 -17.15615 -17.04252 -16.56931 -15.93239 -15.34021 -14.71460 -14.41847 -13.66059 -13.20906 -13.07321 -12.84762 -12.81325 -12.68481 -12.32515 -12.06334 -11.74895 -11.73645 -11.27886 -10.97391 -10.44509 -10.32705 -9.97780 -8.11251 -6.20761 1.39747 1.41061 1.52106 2.43002 2.87004 3.17469 3.59789 4.06563 4.15687 4.32591 4.45063 4.50388 4.55483 4.59676 4.66423 4.81785 4.92049 4.96501 4.99708 5.15303 5.22493 5.27003 5.39403 5.59043 5.63092 5.78179 6.39320 6.60463 6.82594 7.45835 8.97466 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.034293 B = 0.012291 C = 0.010017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.307692 B = 2277.481101 C = 2794.562604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.050 3.950 4 O -0.399 6.399 5 C 0.121 3.879 6 C 0.005 3.995 7 C -0.501 4.501 8 H 0.045 0.955 9 C 0.022 3.978 10 N -0.909 5.909 11 Si 0.950 3.050 12 H -0.274 1.274 13 H -0.280 1.280 14 H -0.273 1.273 15 C -0.184 4.184 16 C -0.149 4.149 17 H 0.064 0.936 18 H 0.074 0.926 19 H 0.056 0.944 20 H 0.068 0.932 21 H 0.057 0.943 22 H 0.037 0.963 23 H 0.053 0.947 24 H 0.023 0.977 25 H 0.035 0.965 26 H 0.260 0.740 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.014 -3.973 -4.046 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C -0.026 4.026 4 O -0.319 6.319 5 C 0.045 3.955 6 C 0.005 3.995 7 C -0.539 4.539 8 H 0.063 0.937 9 C -0.178 4.178 10 N -0.547 5.547 11 Si 0.776 3.224 12 H -0.199 1.199 13 H -0.206 1.206 14 H -0.197 1.197 15 C -0.221 4.221 16 C -0.187 4.187 17 H 0.083 0.917 18 H 0.093 0.907 19 H 0.075 0.925 20 H 0.087 0.913 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.906 -3.976 -3.929 9.682 hybrid contribution 0.356 0.190 0.992 1.071 sum -7.550 -3.785 -2.937 8.942 Atomic orbital electron populations 1.21661 0.92679 1.03045 1.02427 1.21459 0.97256 0.94401 1.02604 1.22710 0.81279 0.98889 0.99735 1.87903 1.19755 1.28999 1.95231 1.21837 0.93663 0.83008 0.97004 1.18938 0.89243 0.99983 0.91362 1.20622 1.40706 0.95820 0.96773 0.93680 1.25673 0.95475 0.95261 1.01388 1.70100 1.49427 1.05912 1.29297 0.85678 0.78577 0.78686 0.79459 1.19935 1.20584 1.19749 1.22926 1.02906 0.99235 0.97056 1.22447 1.01483 0.91068 1.03696 0.91698 0.90689 0.92462 0.91335 0.92449 0.94508 0.92868 0.95883 0.94662 0.93076 0.90523 0.89165 0.90290 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.91 71.98 0.71 -2.17 16 2 C -0.12 -3.38 6.30 30.59 0.19 -3.19 16 3 C 0.05 1.75 5.94 71.98 0.43 2.17 16 4 O -0.40 -18.26 10.27 -148.98 -1.53 -19.79 16 5 C 0.12 5.84 5.76 71.98 0.41 6.25 16 6 C 0.01 0.27 1.61 -52.93 -0.09 0.18 16 7 C -0.50 -29.01 8.75 25.60 0.22 -28.78 16 8 H 0.04 2.66 7.82 -2.91 -0.02 2.63 16 9 C 0.02 1.23 5.44 84.65 0.46 1.69 16 10 N -0.91 -52.93 12.86 21.45 0.28 -52.65 16 11 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 15 C -0.18 -8.29 9.96 30.59 0.30 -7.99 16 16 C -0.15 -7.19 9.39 30.60 0.29 -6.90 16 17 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 18 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 19 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 20 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 21 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.04 1.51 8.09 -2.39 -0.02 1.49 16 26 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 28 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 29 H 0.08 3.46 8.14 -2.38 -0.02 3.44 16 30 H 0.06 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -62.38 258.97 4.79 -57.60 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.08 Total: 6.70 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 2.94 Total: -38.73 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.28 Total: -52.65 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -1.53 Total: -19.79 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -62.38 4.79 -57.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.245 kcal (2) G-P(sol) polarization free energy of solvation -62.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds