Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46848 * 111.00181 * 2 1 4 4 C 1.53039 * 109.51974 * 174.16283 * 3 2 1 5 5 C 1.53198 * 109.29899 * 59.18481 * 4 3 2 6 6 C 1.53120 * 109.11765 * 302.36486 * 5 4 3 7 7 N 1.46906 * 109.50360 * 297.68027 * 6 5 4 8 8 C 1.50695 * 109.50435 * 177.59957 * 6 5 4 9 9 H 1.07994 * 120.00191 * 0.08228 * 8 6 5 10 10 C 1.37885 * 119.99668 * 180.02562 * 8 6 5 11 11 N 1.31505 * 120.00168 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 119.99415 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46951 * 90.00571 * 12 10 8 14 14 H 1.48503 * 109.46933 * 209.99918 * 12 10 8 15 15 H 1.48497 * 109.47849 * 330.00151 * 12 10 8 16 16 C 1.46853 * 110.99647 * 235.79489 * 2 1 3 17 17 H 1.08996 * 109.47309 * 184.20757 * 1 2 3 18 18 H 1.09000 * 109.46840 * 304.21131 * 1 2 3 19 19 H 1.09003 * 109.47354 * 64.20652 * 1 2 3 20 20 H 1.08998 * 109.46391 * 294.17655 * 3 2 1 21 21 H 1.09000 * 109.46109 * 54.15155 * 3 2 1 22 22 H 1.09002 * 109.49851 * 179.11882 * 4 3 2 23 23 H 1.08999 * 109.50800 * 299.23703 * 4 3 2 24 24 H 1.09007 * 109.57599 * 182.46070 * 5 4 3 25 25 H 1.08993 * 109.51796 * 62.24109 * 5 4 3 26 26 H 1.00896 * 111.00309 * 179.91702 * 7 6 5 27 27 H 1.00902 * 110.99923 * 303.87865 * 7 6 5 28 28 H 0.97002 * 119.99896 * 179.97438 * 11 10 8 29 29 H 1.09001 * 109.46367 * 65.82412 * 16 2 1 30 30 H 1.09000 * 109.45330 * 305.84922 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 0.1467 5 6 4.1195 0.5366 -1.0149 6 6 3.5180 -0.8715 -1.0211 7 7 3.8728 -1.5618 0.2262 8 6 4.0595 -1.6448 -2.1956 9 1 4.7633 -1.1800 -2.8700 10 6 3.6571 -2.9464 -2.4086 11 7 2.8013 -3.5130 -1.5865 12 14 4.3278 -3.9047 -3.8651 13 1 5.5671 -4.6162 -3.4611 14 1 3.3149 -4.8923 -4.3165 15 1 4.6346 -2.9676 -4.9755 16 6 1.9952 -0.7707 -1.1339 17 1 -0.3634 -1.0248 0.0754 18 1 -0.3633 0.5778 0.8499 19 1 -0.3634 0.4472 -0.9253 20 1 1.7325 1.8608 -0.9375 21 1 1.5635 1.9257 0.8330 22 1 3.9099 2.3511 0.1309 23 1 3.7815 0.8566 1.0905 24 1 5.2006 0.4703 -0.8914 25 1 3.8895 1.0350 -1.9565 26 1 3.4859 -2.4934 0.2466 27 1 4.8732 -1.5828 0.3560 28 1 2.5180 -4.4285 -1.7366 29 1 1.7323 -0.2707 -2.0661 30 1 1.5633 -1.7715 -1.1242 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084328590.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = -2.691793 kcal Electronic energy + Delta-G solvation = -12089.151668 eV Core-core repulsion = 10111.797255 eV Total energy + Delta-G solvation = -1977.354413 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.11852 -34.20767 -32.12441 -30.35470 -27.22931 -25.88163 -24.97836 -21.80276 -20.87777 -17.95170 -16.46693 -14.97536 -14.37346 -14.05662 -13.99088 -13.49525 -13.00608 -12.48517 -11.99692 -11.76788 -11.27629 -11.05695 -10.97061 -10.76002 -10.51821 -10.16438 -10.09163 -9.87004 -9.35522 -8.89641 -8.57814 -7.23169 -6.87901 -5.97957 -4.19619 3.23370 3.31282 3.34670 4.34463 4.92905 5.22432 5.76584 5.85037 5.94155 6.08651 6.18210 6.27554 6.44182 6.46514 6.62768 6.70116 6.83967 6.87362 7.12423 7.15836 7.51891 7.75097 7.89155 8.09070 8.21344 8.34594 8.79088 9.17192 9.34920 9.57603 10.92508 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053258 B = 0.014844 C = 0.013179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.618225 B = 1885.790914 C = 2124.115888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.527 5.527 3 C 0.064 3.936 4 C -0.107 4.107 5 C -0.102 4.102 6 C 0.243 3.757 7 N -0.831 5.831 8 C -0.545 4.545 9 H 0.053 0.947 10 C 0.068 3.932 11 N -0.888 5.888 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.076 3.924 17 H 0.062 0.938 18 H 0.052 0.948 19 H 0.008 0.992 20 H 0.013 0.987 21 H 0.054 0.946 22 H 0.040 0.960 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.352 0.648 27 H 0.304 0.696 28 H 0.264 0.736 29 H 0.003 0.997 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 5.071 1.612 5.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.251 5.251 3 C -0.065 4.065 4 C -0.145 4.145 5 C -0.141 4.141 6 C 0.151 3.849 7 N -0.360 5.360 8 C -0.585 4.585 9 H 0.071 0.929 10 C -0.134 4.134 11 N -0.528 5.528 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.051 4.051 17 H 0.081 0.919 18 H 0.071 0.929 19 H 0.027 0.973 20 H 0.031 0.969 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.095 0.905 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.168 0.832 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.801 5.248 2.431 6.057 hybrid contribution 0.502 -0.860 -2.379 2.579 sum -1.299 4.388 0.052 4.577 Atomic orbital electron populations 1.22282 0.89881 1.01320 0.98487 1.61974 1.04959 1.12002 1.46149 1.21952 0.96303 0.90223 0.98009 1.21485 0.94071 0.97779 1.01143 1.21615 0.98818 0.97677 0.95964 1.18240 0.90173 0.88924 0.87601 1.59303 1.13449 1.25695 1.37512 1.21981 1.26359 0.97799 1.12384 0.92857 1.25013 0.94476 0.97622 0.96285 1.69685 1.32242 1.13863 1.36977 0.86602 0.78693 0.79726 0.82986 1.20697 1.21177 1.20060 1.22276 0.97811 0.98203 0.86820 0.91906 0.92916 0.97310 0.96872 0.92733 0.94153 0.90476 0.93589 0.93984 0.83241 0.88807 0.92608 0.97856 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.59 60.06 0.58 1.11 16 2 N -0.53 -11.35 4.76 -242.96 -1.16 -12.51 16 3 C 0.06 1.23 5.47 -3.83 -0.02 1.20 16 4 C -0.11 -2.07 5.93 -26.61 -0.16 -2.22 16 5 C -0.10 -2.24 4.87 -26.57 -0.13 -2.37 16 6 C 0.24 5.98 0.53 -132.67 -0.07 5.91 16 7 N -0.83 -20.12 8.07 -0.13 0.00 -20.12 16 8 C -0.54 -14.64 8.21 -34.44 -0.28 -14.92 16 9 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 10 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 11 N -0.89 -23.95 9.55 55.43 0.53 -23.42 16 12 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.08 1.87 4.14 -3.83 -0.02 1.86 16 17 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 18 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 19 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 20 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 21 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 1.57 7.73 -51.93 -0.40 1.16 16 24 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.35 9.19 6.93 -39.29 -0.27 8.92 16 27 H 0.30 7.07 8.98 -39.29 -0.35 6.72 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.10 2.77 6.09 -51.93 -0.32 2.45 16 LS Contribution 236.13 15.07 3.56 3.56 Total: -1.00 -26.88 236.13 -6.97 -33.85 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -4.68 Total: 10.51 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.19 Total: -7.71 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.63 Total: -56.05 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -26.88 -6.97 -33.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328590.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.161 kcal (2) G-P(sol) polarization free energy of solvation -26.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds