Wall clock time and date at job start Mon Mar 30 2020 02:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00146 * 2 1 4 4 C 1.52997 * 109.46952 * 293.95695 * 3 2 1 5 5 C 1.50700 * 109.47035 * 179.97438 * 4 3 2 6 6 H 1.07991 * 120.00284 * 359.97438 * 5 4 3 7 7 C 1.37887 * 119.99953 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99841 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99760 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47347 * 89.99775 * 9 7 5 11 11 H 1.48506 * 109.47104 * 209.99543 * 9 7 5 12 12 H 1.48498 * 109.47132 * 329.99637 * 9 7 5 13 13 C 1.46903 * 111.00000 * 123.95374 * 2 1 3 14 14 C 1.53506 * 114.17334 * 56.04402 * 13 2 1 15 15 N 1.47481 * 87.93471 * 139.67202 * 14 13 2 16 16 C 1.47488 * 87.83530 * 332.99146 * 15 14 13 17 17 H 1.09002 * 109.47004 * 296.04497 * 1 2 3 18 18 H 1.08997 * 109.47132 * 56.04704 * 1 2 3 19 19 H 1.09003 * 109.46835 * 176.04935 * 1 2 3 20 20 H 1.09005 * 109.47111 * 53.94803 * 3 2 1 21 21 H 1.09002 * 109.47502 * 173.95082 * 3 2 1 22 22 H 1.09006 * 109.47084 * 299.99953 * 4 3 2 23 23 H 1.09002 * 109.47517 * 59.99396 * 4 3 2 24 24 H 0.97000 * 119.99866 * 180.02562 * 8 7 5 25 25 H 1.09007 * 113.38504 * 282.96589 * 13 2 1 26 26 H 1.09007 * 113.47650 * 24.90984 * 14 13 2 27 27 H 1.08997 * 113.53552 * 254.44705 * 14 13 2 28 28 H 1.00901 * 110.99857 * 84.68111 * 15 14 13 29 29 H 1.08997 * 113.47731 * 141.77388 * 16 15 14 30 30 H 1.09001 * 113.47471 * 272.24480 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1710 3.4645 -1.3180 6 1 2.7183 3.8328 -0.4630 7 6 1.9657 4.2818 -2.4094 8 7 2.4362 5.5099 -2.4090 9 14 1.0183 3.6449 -3.8880 10 1 -0.4275 3.9347 -3.7118 11 1 1.5111 4.3154 -5.1180 12 1 1.2180 2.1785 -4.0097 13 6 1.9955 -0.7660 1.1376 14 6 1.4904 -2.2139 1.2081 15 7 2.8538 -2.6138 1.6035 16 6 3.3518 -1.4340 0.8718 17 1 -0.3633 0.4512 0.9233 18 1 -0.3633 0.5739 -0.8524 19 1 -0.3633 -1.0253 -0.0708 20 1 1.5610 1.9274 0.8309 21 1 3.0798 1.3444 0.1083 22 1 2.0657 1.5014 -2.1492 23 1 0.5471 2.0844 -1.4265 24 1 2.2915 6.0849 -3.1766 25 1 1.9409 -0.2278 2.0840 26 1 1.1836 -2.6143 0.2418 27 1 0.7466 -2.3779 1.9877 28 1 2.9883 -2.5059 2.5977 29 1 4.1855 -0.9361 1.3668 30 1 3.5416 -1.6263 -0.1842 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085258310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:13 Heat of formation + Delta-G solvation = 39.165212 kcal Electronic energy + Delta-G solvation = -11309.039305 eV Core-core repulsion = 9333.499949 eV Total energy + Delta-G solvation = -1975.539357 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.84558 -35.98251 -32.83421 -30.13275 -27.12083 -26.00447 -25.08334 -22.85975 -20.04624 -19.84754 -16.93256 -16.44591 -15.52781 -14.60962 -14.33959 -13.99725 -13.23220 -12.92478 -12.60468 -12.50158 -12.19980 -11.78594 -11.45663 -11.23143 -10.95211 -10.41679 -9.95219 -9.92189 -9.74973 -9.21491 -8.69743 -8.53309 -7.93265 -6.05051 -4.03301 3.31455 3.39261 3.45390 4.16035 4.34350 4.45893 4.46611 4.95898 5.29323 5.41467 5.53980 5.63413 5.72556 5.80980 5.81264 5.92159 6.09245 6.20216 6.27288 6.33849 6.74267 7.11227 7.23124 7.26494 7.56070 7.60675 7.83505 8.52232 8.98799 9.57406 11.08332 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.069987 B = 0.009012 C = 0.008560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.980196 B = 3106.075422 C = 3270.259916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.531 5.531 3 C 0.070 3.930 4 C -0.007 4.007 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.880 3.120 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.262 1.262 13 C 0.005 3.995 14 C 0.023 3.977 15 N -0.652 5.652 16 C 0.028 3.972 17 H 0.019 0.981 18 H 0.075 0.925 19 H 0.059 0.941 20 H 0.025 0.975 21 H 0.066 0.934 22 H 0.025 0.975 23 H 0.011 0.989 24 H 0.263 0.737 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.332 0.668 29 H 0.066 0.934 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 -12.704 6.149 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.256 5.256 3 C -0.057 4.057 4 C -0.044 4.044 5 C -0.561 4.561 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.707 3.293 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.187 1.187 13 C -0.105 4.105 14 C -0.108 4.108 15 N -0.278 5.278 16 C -0.103 4.103 17 H 0.038 0.962 18 H 0.094 0.906 19 H 0.078 0.922 20 H 0.043 0.957 21 H 0.085 0.915 22 H 0.043 0.957 23 H 0.030 0.970 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.081 0.919 28 H 0.145 0.855 29 H 0.085 0.915 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.335 -13.509 5.177 14.654 hybrid contribution -1.050 1.265 0.537 1.729 sum -3.385 -12.244 5.714 13.929 Atomic orbital electron populations 1.22358 0.88065 1.01133 1.00895 1.62415 1.07544 1.16136 1.39464 1.22137 0.99152 0.84984 0.99442 1.19570 0.96172 0.95713 0.92986 1.21087 1.35700 0.95536 1.03765 0.91191 1.25000 0.95335 0.94651 0.98387 1.69915 1.46323 1.07123 1.30931 0.86764 0.80247 0.79876 0.82381 1.20397 1.21375 1.18686 1.24714 0.97389 0.94663 0.93781 1.23644 0.92259 0.92676 1.02179 1.65634 1.08347 1.41415 1.12413 1.23627 0.95729 0.89430 1.01489 0.96235 0.90585 0.92209 0.95704 0.91532 0.95676 0.97047 0.92718 0.91882 0.87817 0.91861 0.85485 0.91550 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.14 60.06 0.55 0.92 16 2 N -0.53 -9.09 4.75 -234.55 -1.11 -10.21 16 3 C 0.07 1.42 4.89 -3.83 -0.02 1.40 16 4 C -0.01 -0.16 3.97 -27.88 -0.11 -0.27 16 5 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 6 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 9 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -6.34 6.54 56.52 0.37 -5.98 16 13 C 0.01 0.07 3.45 -67.50 -0.23 -0.16 16 14 C 0.02 0.27 7.20 -7.54 -0.05 0.22 16 15 N -0.65 -7.91 8.76 -122.65 -1.07 -8.99 16 16 C 0.03 0.37 8.42 -7.53 -0.06 0.30 16 17 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 18 H 0.08 1.28 6.30 -51.93 -0.33 0.95 16 19 H 0.06 0.78 7.08 -51.93 -0.37 0.41 16 20 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 21 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 22 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 23 H 0.01 0.27 5.90 -51.93 -0.31 -0.03 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 26 H 0.10 1.32 7.89 -51.92 -0.41 0.91 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.33 3.37 8.85 -39.29 -0.35 3.03 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 244.30 15.07 3.68 3.68 Total: -1.00 -30.55 244.30 -7.44 -37.98 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.67 Total: -1.38 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.36 Total: -11.08 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -1.42 Total: -46.50 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.55 -7.44 -37.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085258310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.148 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds