Wall clock time and date at job start Mon Mar 30 2020 02:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00146 * 2 1 4 4 C 1.52997 * 109.46952 * 293.95695 * 3 2 1 5 5 C 1.50700 * 109.47035 * 179.97438 * 4 3 2 6 6 H 1.07991 * 120.00284 * 359.97438 * 5 4 3 7 7 C 1.37887 * 119.99953 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99841 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99760 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47347 * 89.99775 * 9 7 5 11 11 H 1.48506 * 109.47104 * 209.99543 * 9 7 5 12 12 H 1.48498 * 109.47132 * 329.99637 * 9 7 5 13 13 C 1.46903 * 111.00000 * 123.95374 * 2 1 3 14 14 C 1.53506 * 114.17334 * 56.04402 * 13 2 1 15 15 N 1.47481 * 87.93471 * 139.67202 * 14 13 2 16 16 C 1.47488 * 87.83530 * 332.99146 * 15 14 13 17 17 H 1.09002 * 109.47004 * 296.04497 * 1 2 3 18 18 H 1.08997 * 109.47132 * 56.04704 * 1 2 3 19 19 H 1.09003 * 109.46835 * 176.04935 * 1 2 3 20 20 H 1.09005 * 109.47111 * 53.94803 * 3 2 1 21 21 H 1.09002 * 109.47502 * 173.95082 * 3 2 1 22 22 H 1.09006 * 109.47084 * 299.99953 * 4 3 2 23 23 H 1.09002 * 109.47517 * 59.99396 * 4 3 2 24 24 H 0.97000 * 119.99866 * 180.02562 * 8 7 5 25 25 H 1.09007 * 113.38504 * 282.96589 * 13 2 1 26 26 H 1.09007 * 113.47650 * 24.90984 * 14 13 2 27 27 H 1.08997 * 113.53552 * 254.44705 * 14 13 2 28 28 H 1.00901 * 110.99857 * 84.68111 * 15 14 13 29 29 H 1.08997 * 113.47731 * 141.77388 * 16 15 14 30 30 H 1.09001 * 113.47471 * 272.24480 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1710 3.4645 -1.3180 6 1 2.7183 3.8328 -0.4630 7 6 1.9657 4.2818 -2.4094 8 7 2.4362 5.5099 -2.4090 9 14 1.0183 3.6449 -3.8880 10 1 -0.4275 3.9347 -3.7118 11 1 1.5111 4.3154 -5.1180 12 1 1.2180 2.1785 -4.0097 13 6 1.9955 -0.7660 1.1376 14 6 1.4904 -2.2139 1.2081 15 7 2.8538 -2.6138 1.6035 16 6 3.3518 -1.4340 0.8718 17 1 -0.3633 0.4512 0.9233 18 1 -0.3633 0.5739 -0.8524 19 1 -0.3633 -1.0253 -0.0708 20 1 1.5610 1.9274 0.8309 21 1 3.0798 1.3444 0.1083 22 1 2.0657 1.5014 -2.1492 23 1 0.5471 2.0844 -1.4265 24 1 2.2915 6.0849 -3.1766 25 1 1.9409 -0.2278 2.0840 26 1 1.1836 -2.6143 0.2418 27 1 0.7466 -2.3779 1.9877 28 1 2.9883 -2.5059 2.5977 29 1 4.1855 -0.9361 1.3668 30 1 3.5416 -1.6263 -0.1842 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085258310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:12 Heat of formation + Delta-G solvation = 14.416918 kcal Electronic energy + Delta-G solvation = -11310.112472 eV Core-core repulsion = 9333.499949 eV Total energy + Delta-G solvation = -1976.612523 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.92767 -37.41745 -34.93620 -32.03277 -28.32190 -27.42035 -26.32891 -24.45334 -21.75317 -21.02474 -19.04595 -17.43709 -16.93881 -16.27681 -15.92110 -15.58714 -14.70543 -14.58020 -14.13563 -13.63163 -13.38146 -13.28938 -13.07433 -12.72456 -12.56920 -11.91762 -11.77917 -11.59613 -11.46052 -11.26919 -10.76624 -9.73572 -9.26739 -8.31380 -6.35841 1.35176 1.38120 1.51221 2.35711 3.03367 3.04490 3.19648 3.39239 3.92800 4.22860 4.37217 4.47312 4.56143 4.63726 4.71747 4.78673 4.80898 4.92268 4.94137 5.06232 5.12963 5.30280 5.44727 5.61623 6.07067 6.17615 6.28560 6.39536 6.71901 7.29085 8.85364 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.069987 B = 0.009012 C = 0.008560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.980196 B = 3106.075422 C = 3270.259916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.538 5.538 3 C 0.083 3.917 4 C 0.001 3.999 5 C -0.535 4.535 6 H 0.031 0.969 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.952 3.048 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.248 1.248 13 C -0.001 4.001 14 C 0.034 3.966 15 N -0.652 5.652 16 C 0.027 3.973 17 H 0.024 0.976 18 H 0.060 0.940 19 H 0.088 0.912 20 H 0.016 0.984 21 H 0.059 0.941 22 H 0.021 0.979 23 H 0.019 0.981 24 H 0.267 0.733 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.345 0.655 29 H 0.071 0.929 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 -14.734 6.003 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.045 4.045 4 C -0.037 4.037 5 C -0.574 4.574 6 H 0.049 0.951 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.775 3.225 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.171 1.171 13 C -0.111 4.111 14 C -0.096 4.096 15 N -0.279 5.279 16 C -0.104 4.104 17 H 0.043 0.957 18 H 0.079 0.921 19 H 0.107 0.893 20 H 0.034 0.966 21 H 0.077 0.923 22 H 0.039 0.961 23 H 0.038 0.962 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.160 0.840 29 H 0.090 0.910 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.529 -15.563 5.058 16.741 hybrid contribution -0.625 1.904 0.678 2.115 sum -4.154 -13.660 5.735 15.386 Atomic orbital electron populations 1.22415 0.86907 1.02781 1.00454 1.62344 1.08685 1.13792 1.41420 1.21799 0.98810 0.86898 0.97004 1.19435 0.96162 0.93179 0.94925 1.21430 1.35330 0.97989 1.02642 0.95067 1.25989 0.96434 0.94724 1.01903 1.70063 1.48060 1.08724 1.32257 0.85632 0.79021 0.79913 0.77951 1.19023 1.20842 1.17125 1.24879 0.98111 0.95306 0.92821 1.23592 0.92727 0.90437 1.02843 1.65599 1.08341 1.40623 1.13386 1.23568 0.95794 0.89962 1.01056 0.95735 0.92116 0.89327 0.96577 0.92279 0.96074 0.96241 0.92403 0.91472 0.88186 0.89559 0.84019 0.91003 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.14 127.69 1.17 1.80 16 2 N -0.54 -17.47 4.75 -895.99 -4.26 -21.73 16 3 C 0.08 3.34 4.89 86.30 0.42 3.77 16 4 C 0.00 0.03 3.97 29.85 0.12 0.15 16 5 C -0.54 -31.45 9.66 25.60 0.25 -31.21 16 6 H 0.03 2.01 7.99 -2.92 -0.02 1.98 16 7 C 0.01 0.38 5.47 84.66 0.46 0.85 16 8 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 9 Si 0.95 44.90 27.47 68.60 1.88 46.79 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 13 C 0.00 -0.03 3.45 45.37 0.16 0.13 16 14 C 0.03 0.71 7.20 83.58 0.60 1.32 16 15 N -0.65 -14.09 8.76 -541.94 -4.75 -18.84 16 16 C 0.03 0.67 8.42 83.58 0.70 1.37 16 17 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 18 H 0.06 1.91 6.30 -2.39 -0.02 1.89 16 19 H 0.09 2.00 7.08 -2.39 -0.02 1.99 16 20 H 0.02 0.67 8.12 -2.38 -0.02 0.65 16 21 H 0.06 2.44 8.07 -2.39 -0.02 2.42 16 22 H 0.02 1.02 7.20 -2.38 -0.02 1.01 16 23 H 0.02 0.90 5.90 -2.39 -0.01 0.89 16 24 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.07 1.72 8.13 -2.38 -0.02 1.70 16 26 H 0.10 2.21 7.89 -2.38 -0.02 2.20 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.34 6.01 8.85 -89.69 -0.79 5.22 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -65.52 244.30 -2.68 -68.20 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.26 Total: 7.33 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 3.88 Total: -21.82 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -8.71 Total: -100.49 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.79 kcal Total: -65.52 -2.68 -68.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085258310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.614 kcal (2) G-P(sol) polarization free energy of solvation -65.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds