Wall clock time and date at job start Mon Mar 30 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46638 * 2 1 4 4 C 1.52996 * 109.46899 * 240.00309 * 2 1 3 5 5 C 1.53004 * 109.46899 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47000 * 59.99993 * 5 4 2 7 7 C 1.53005 * 109.47190 * 299.99566 * 6 5 4 8 8 O 1.42902 * 109.47182 * 300.00494 * 7 6 5 9 9 C 1.50701 * 109.47000 * 180.02562 * 7 6 5 10 10 H 1.08002 * 119.99761 * 239.99828 * 9 7 6 11 11 C 1.37871 * 119.99694 * 60.28391 * 9 7 6 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 7 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 7 14 14 H 1.48504 * 109.47266 * 60.00049 * 13 11 9 15 15 H 1.48504 * 109.46970 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47383 * 299.99456 * 13 11 9 17 17 C 1.52997 * 109.47000 * 120.00302 * 2 1 3 18 18 H 1.08998 * 109.47285 * 299.99853 * 1 2 3 19 19 H 1.08991 * 109.47547 * 60.00171 * 1 2 3 20 20 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.47102 * 299.99370 * 4 2 1 22 22 H 1.08996 * 109.47637 * 59.99854 * 4 2 1 23 23 H 1.09007 * 109.46700 * 179.97438 * 5 4 2 24 24 H 1.08995 * 109.46638 * 299.99690 * 5 4 2 25 25 H 1.09004 * 109.46774 * 180.02562 * 6 5 4 26 26 H 1.08995 * 109.47672 * 60.00331 * 6 5 4 27 27 H 0.96699 * 114.00104 * 299.99850 * 8 7 6 28 28 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.47849 * 59.99917 * 17 2 1 30 30 H 1.09007 * 109.47288 * 299.99511 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0794 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2496 8 8 4.0463 0.6250 1.2499 9 6 4.0718 -1.4327 2.4800 10 1 3.3700 -1.8431 3.1909 11 6 5.4273 -1.5536 2.7010 12 7 6.2820 -1.0538 1.8353 13 14 6.0500 -2.4275 4.2301 14 1 5.5595 -3.8292 4.2335 15 1 7.5350 -2.4232 4.2325 16 1 5.5506 -1.7253 5.4395 17 6 2.0400 -0.7213 1.2492 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5137 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.6767 -1.7489 -1.2493 22 1 1.6767 -0.2074 -2.1392 23 1 3.9333 -1.2360 -2.1388 24 1 3.9336 0.3058 -1.2487 25 1 5.1695 -1.4434 0.0007 26 1 3.7158 -2.4709 0.0000 27 1 5.0103 0.7010 1.2500 28 1 7.2356 -1.1386 1.9910 29 1 1.6767 -1.7490 1.2493 30 1 1.6767 -0.2075 2.1393 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877354.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:25 Heat of formation + Delta-G solvation = -100.597841 kcal Electronic energy + Delta-G solvation = -12035.997291 eV Core-core repulsion = 10022.104603 eV Total energy + Delta-G solvation = -2013.892688 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.96145 -36.22369 -34.08005 -32.70707 -30.87947 -27.09265 -26.81910 -22.76569 -21.87075 -20.26736 -18.71751 -16.97570 -16.35401 -15.76410 -15.44431 -14.90404 -14.61734 -13.76746 -13.60018 -13.13664 -12.98605 -12.89535 -12.80751 -12.44166 -12.28696 -12.12803 -11.76243 -11.52810 -11.27484 -11.12652 -10.59813 -10.48446 -9.84893 -8.13335 -6.33393 1.39956 1.40775 1.48598 2.39402 3.05998 4.00135 4.09403 4.12769 4.38829 4.54238 4.65963 4.80498 4.84485 4.96456 4.96827 5.01736 5.13430 5.18796 5.32146 5.40582 5.49587 5.59077 5.62070 5.71183 5.90018 6.14494 6.26883 6.73335 7.38202 7.56157 8.85728 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.061426 B = 0.013571 C = 0.012414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.726044 B = 2062.723162 C = 2254.974158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.053 0.947 4 C -0.102 4.102 5 C -0.112 4.112 6 C -0.130 4.130 7 C 0.237 3.763 8 O -0.597 6.597 9 C -0.566 4.566 10 H 0.047 0.953 11 C 0.027 3.973 12 N -0.913 5.913 13 Si 0.956 3.044 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.276 1.276 17 C -0.087 4.087 18 H 0.050 0.950 19 H 0.067 0.933 20 H 0.058 0.942 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.370 0.630 28 H 0.268 0.732 29 H 0.058 0.942 30 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 -0.187 -4.326 7.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.071 0.929 4 C -0.140 4.140 5 C -0.150 4.150 6 C -0.168 4.168 7 C 0.198 3.802 8 O -0.405 6.405 9 C -0.604 4.604 10 H 0.066 0.934 11 C -0.172 4.172 12 N -0.553 5.553 13 Si 0.781 3.219 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.202 1.202 17 C -0.124 4.124 18 H 0.069 0.931 19 H 0.086 0.914 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.218 0.782 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.598 -0.045 -4.361 7.909 hybrid contribution 1.347 -0.612 1.040 1.809 sum -5.251 -0.657 -3.321 6.248 Atomic orbital electron populations 1.21786 0.93863 1.01999 1.01855 1.21048 0.96011 0.98984 0.94593 0.92877 1.21525 0.94792 1.00314 0.97342 1.21473 0.96414 0.99872 0.97201 1.21998 1.01929 0.97477 0.95433 1.18813 0.90408 0.79462 0.91492 1.86088 1.26946 1.30063 1.97365 1.22132 0.92492 1.37192 1.08607 0.93426 1.25681 0.96906 0.95491 0.99134 1.69694 1.02599 1.46681 1.36338 0.85660 0.77152 0.79076 0.79980 1.19771 1.20464 1.20182 1.21451 0.94774 0.99165 0.97056 0.93087 0.91354 0.92297 0.92116 0.90774 0.92356 0.93594 0.91910 0.94806 0.78176 0.92283 0.92292 0.94426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.19 71.98 0.66 -3.21 16 2 C -0.09 -3.19 2.57 -10.79 -0.03 -3.22 16 3 H 0.05 2.12 7.68 -2.39 -0.02 2.11 16 4 C -0.10 -3.44 5.20 30.59 0.16 -3.28 16 5 C -0.11 -4.41 5.78 30.59 0.18 -4.23 16 6 C -0.13 -6.23 4.70 30.59 0.14 -6.08 16 7 C 0.24 12.11 0.66 -11.55 -0.01 12.11 16 8 O -0.60 -32.07 11.61 -148.98 -1.73 -33.80 16 9 C -0.57 -31.67 8.24 25.60 0.21 -31.46 16 10 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 11 C 0.03 1.49 5.22 84.65 0.44 1.93 16 12 N -0.91 -50.15 9.68 21.45 0.21 -49.95 16 13 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 15 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 C -0.09 -3.81 4.16 30.58 0.13 -3.69 16 18 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 19 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 20 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.05 1.91 7.68 -2.39 -0.02 1.89 16 25 H 0.06 3.34 6.08 -2.38 -0.01 3.32 16 26 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.37 20.55 7.13 -74.06 -0.53 20.02 16 28 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -57.71 235.79 2.96 -54.75 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.57 Total: 24.73 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 1.89 Total: -41.13 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.21 Total: -49.95 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.73 Total: -33.80 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -57.71 2.96 -54.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877354.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.848 kcal (2) G-P(sol) polarization free energy of solvation -57.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds