Wall clock time and date at job start Mon Mar 30 2020 02:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46898 * 109.46982 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99616 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.01600 * 34.30200 * 11 10 9 13 13 C 1.54260 * 110.03485 * 272.90812 * 11 10 9 14 14 C 1.54969 * 104.16061 * 217.13568 * 13 11 10 15 15 C 1.54893 * 102.77686 * 37.88600 * 14 13 11 16 16 H 1.09003 * 110.48359 * 80.75798 * 15 14 13 17 17 N 1.46895 * 110.59874 * 203.34733 * 15 14 13 18 18 C 1.53875 * 110.03322 * 155.68815 * 11 10 9 19 19 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 21 21 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 22 22 H 1.00898 * 111.00220 * 56.04491 * 10 9 7 23 23 H 1.08999 * 110.48571 * 335.77987 * 13 11 10 24 24 H 1.09003 * 110.48769 * 98.42678 * 13 11 10 25 25 H 1.09000 * 110.71966 * 279.57428 * 14 13 11 26 26 H 1.09003 * 110.92343 * 156.29274 * 14 13 11 27 27 H 1.00897 * 111.00698 * 294.84042 * 17 15 14 28 28 H 1.00901 * 110.99549 * 58.79705 * 17 15 14 29 29 H 1.08999 * 110.03503 * 238.57204 * 18 11 10 30 30 H 1.09003 * 110.02922 * 359.95345 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2057 -3.6157 -0.0131 11 6 1.5054 -4.9070 -0.0128 12 1 0.5810 -4.8303 -0.5854 13 6 1.1958 -5.3400 1.4350 14 6 1.3962 -6.8766 1.4223 15 6 2.6187 -7.0549 0.4881 16 1 3.5445 -6.8625 1.0304 17 7 2.6344 -8.4050 -0.0906 18 6 2.4093 -5.9970 -0.6150 19 1 -0.4850 -0.8400 0.0004 20 1 0.6281 -2.5591 0.8866 21 1 0.6207 -2.5548 -0.8933 22 1 2.8441 -3.5507 0.7655 23 1 1.8915 -4.8705 2.1306 24 1 0.1673 -5.0908 1.6961 25 1 0.5193 -7.3764 1.0107 26 1 1.6171 -7.2487 2.4228 27 1 2.7710 -9.1035 0.6245 28 1 1.7905 -8.5837 -0.6142 29 1 1.9233 -6.4498 -1.4792 30 1 3.3674 -5.5676 -0.9082 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086398058.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:51 Heat of formation + Delta-G solvation = -21.277144 kcal Electronic energy + Delta-G solvation = -11225.272279 eV Core-core repulsion = 9247.111945 eV Total energy + Delta-G solvation = -1978.160334 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.59815 -34.87473 -32.81613 -30.90033 -28.27476 -26.20918 -24.32251 -21.94561 -20.56843 -19.50251 -16.92161 -16.34644 -15.39289 -14.69763 -13.96568 -13.65028 -13.32971 -12.91890 -12.63054 -12.19740 -12.00226 -11.25578 -10.99335 -10.89169 -10.70794 -10.66368 -10.49719 -10.19092 -10.04241 -8.68795 -8.61868 -8.40382 -7.35933 -6.37153 -4.05881 3.45271 3.48127 3.66548 4.47126 4.54255 4.76221 4.86958 5.07953 5.39133 5.41054 5.57538 5.67883 5.73955 5.77383 5.90103 6.01078 6.20936 6.34529 6.54282 6.59437 6.98131 7.12025 7.18003 7.38978 7.82131 8.17490 8.49040 8.59116 8.87962 9.66091 11.02662 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.095024 B = 0.007748 C = 0.007519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 294.592753 B = 3613.063534 C = 3723.058523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 1.074 2.926 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.596 4.596 8 H 0.056 0.944 9 C 0.183 3.817 10 N -0.676 5.676 11 C 0.081 3.919 12 H 0.070 0.930 13 C -0.148 4.148 14 C -0.156 4.156 15 C 0.084 3.916 16 H 0.084 0.916 17 N -0.843 5.843 18 C -0.106 4.106 19 H 0.266 0.734 20 H -0.024 1.024 21 H 0.017 0.983 22 H 0.331 0.669 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.336 0.664 28 H 0.338 0.662 29 H 0.062 0.938 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 -12.761 2.439 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.902 3.098 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.634 4.634 8 H 0.074 0.926 9 C 0.056 3.944 10 N -0.306 5.306 11 C -0.031 4.031 12 H 0.088 0.912 13 C -0.188 4.188 14 C -0.196 4.196 15 C -0.027 4.027 16 H 0.102 0.898 17 N -0.371 5.371 18 C -0.145 4.145 19 H 0.077 0.923 20 H -0.006 1.006 21 H 0.035 0.965 22 H 0.149 0.851 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.081 0.919 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.331 -10.829 1.316 11.406 hybrid contribution -1.123 -1.912 1.593 2.730 sum 2.208 -12.742 2.909 13.255 Atomic orbital electron populations 1.70796 1.06895 1.30384 1.46988 1.25881 0.96496 1.02798 0.93812 0.83473 0.74769 0.75011 0.76554 1.20826 1.21485 1.21335 1.22026 0.94831 0.91369 1.55218 0.92611 1.19673 0.91314 0.89062 0.94340 1.60700 1.20003 1.00674 1.49176 1.22197 0.96405 0.90909 0.93578 0.91160 1.23085 1.01650 0.94986 0.99106 1.23278 0.99083 0.97313 0.99960 1.22377 0.97083 0.88729 0.94537 0.89830 1.58888 1.44538 1.03480 1.30191 1.22207 1.01231 0.94208 0.96834 0.92348 1.00649 0.96542 0.85097 0.91494 0.92108 0.91948 0.92205 0.85194 0.84904 0.91898 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.42 13.65 55.43 0.76 -27.66 16 2 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 3 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.60 -17.41 9.32 -34.44 -0.32 -17.74 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.18 4.87 4.58 -4.97 -0.02 4.85 16 10 N -0.68 -14.84 6.16 -106.81 -0.66 -15.50 16 11 C 0.08 1.44 3.23 -66.60 -0.21 1.23 16 12 H 0.07 1.33 7.82 -51.93 -0.41 0.93 16 13 C -0.15 -2.32 6.43 -25.03 -0.16 -2.48 16 14 C -0.16 -1.94 6.56 -24.69 -0.16 -2.10 16 15 C 0.08 1.07 4.00 -66.06 -0.26 0.81 16 16 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 17 N -0.84 -9.16 9.32 -3.26 -0.03 -9.19 16 18 C -0.11 -1.62 6.31 -25.61 -0.16 -1.78 16 19 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 20 H -0.02 -0.67 7.99 -51.93 -0.42 -1.08 16 21 H 0.02 0.47 7.93 -51.93 -0.41 0.06 16 22 H 0.33 7.03 8.11 -39.29 -0.32 6.71 16 23 H 0.07 1.08 7.57 -51.93 -0.39 0.68 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.34 3.00 9.08 -39.29 -0.36 2.64 16 28 H 0.34 3.35 8.86 -39.29 -0.35 3.00 16 29 H 0.06 0.92 7.92 -51.93 -0.41 0.51 16 30 H 0.08 1.32 7.92 -51.93 -0.41 0.91 16 LS Contribution 247.03 15.07 3.72 3.72 Total: -1.00 -30.92 247.03 -7.36 -38.28 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.66 Total: 6.64 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -1.40 Total: -16.91 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.07 Total: -52.35 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.92 -7.36 -38.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086398058.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.999 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds