Wall clock time and date at job start Mon Mar 30 2020 02:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99816 * 2 1 4 4 H 1.48512 * 109.47172 * 240.00339 * 3 2 1 5 5 H 1.48501 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47227 * 120.00237 * 3 2 1 7 7 C 1.37873 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00285 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47348 * 180.02562 * 9 7 2 11 11 C 1.46906 * 111.00080 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.53846 * 36.15768 * 11 10 9 13 13 C 1.54270 * 110.48470 * 273.54743 * 11 10 9 14 14 C 1.53869 * 106.63967 * 217.73508 * 13 11 10 15 15 C 1.54268 * 106.60115 * 359.97438 * 14 13 11 16 16 H 1.09000 * 110.48806 * 264.79985 * 15 14 13 17 17 N 1.46905 * 110.49065 * 142.28923 * 15 14 13 18 18 C 1.54895 * 104.19476 * 23.60777 * 15 14 13 19 19 H 0.96995 * 120.00352 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.46851 * 59.99950 * 9 7 2 21 21 H 1.09005 * 109.47385 * 300.00515 * 9 7 2 22 22 H 1.00897 * 111.00376 * 303.95418 * 10 9 7 23 23 H 1.09002 * 110.03399 * 98.42506 * 13 11 10 24 24 H 1.08995 * 110.02943 * 337.04406 * 13 11 10 25 25 H 1.08999 * 110.03405 * 119.26051 * 14 13 11 26 26 H 1.08996 * 110.03529 * 240.68999 * 14 13 11 27 27 H 1.00900 * 110.99673 * 61.45069 * 17 15 14 28 28 H 1.00900 * 110.99774 * 185.41158 * 17 15 14 29 29 H 1.09001 * 110.75082 * 80.37254 * 18 15 14 30 30 H 1.08991 * 110.75596 * 203.55944 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 1 0.5989 -4.8502 -0.6037 13 6 1.1690 -5.3394 1.4410 14 6 1.3662 -6.8642 1.5012 15 6 1.8152 -7.3065 0.0931 16 1 0.9589 -7.6399 -0.4932 17 7 2.8203 -8.3739 0.1854 18 6 2.4358 -6.0295 -0.5262 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.8406 -3.5486 -0.7819 23 1 0.1346 -5.0872 1.6748 24 1 1.8410 -4.8480 2.1445 25 1 2.1345 -7.1128 2.2333 26 1 0.4276 -7.3521 1.7641 27 1 2.4412 -9.1888 0.6439 28 1 3.1839 -8.6080 -0.7262 29 1 3.4554 -5.8836 -0.1696 30 1 2.4120 -6.0774 -1.6148 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086398062.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:56 Heat of formation + Delta-G solvation = -40.631286 kcal Electronic energy + Delta-G solvation = -11162.062362 eV Core-core repulsion = 9183.062770 eV Total energy + Delta-G solvation = -1978.999592 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.62319 -36.33646 -34.50910 -32.57154 -29.77271 -28.14736 -26.13007 -23.75364 -21.31918 -20.55556 -18.56442 -17.34403 -16.69794 -16.20714 -16.09799 -15.55250 -15.13512 -14.41523 -14.27739 -13.50274 -13.28726 -12.70479 -12.47915 -12.41688 -12.19470 -12.01778 -11.90790 -11.74765 -11.36451 -11.21445 -10.66531 -9.58719 -9.13632 -8.23444 -6.35300 1.40662 1.44850 1.52886 2.39752 3.09549 3.44300 3.57631 3.64365 4.02893 4.10883 4.46365 4.56037 4.58319 4.69039 4.90280 4.98754 5.03480 5.13476 5.21935 5.29241 5.33588 5.39563 5.63900 6.03046 6.31289 6.47067 6.67857 6.73840 6.89247 7.35984 8.88201 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.095553 B = 0.007637 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.960952 B = 3665.392832 C = 3784.636296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.210 3.790 10 N -0.681 5.681 11 C 0.074 3.926 12 H 0.025 0.975 13 C -0.112 4.112 14 C -0.106 4.106 15 C 0.092 3.908 16 H 0.048 0.952 17 N -0.846 5.846 18 C -0.107 4.107 19 H 0.266 0.734 20 H -0.042 1.042 21 H -0.002 1.002 22 H 0.334 0.666 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.351 0.649 28 H 0.349 0.651 29 H 0.077 0.923 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.381 -13.720 -0.668 14.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.311 5.311 11 C -0.037 4.037 12 H 0.043 0.957 13 C -0.150 4.150 14 C -0.145 4.145 15 C -0.020 4.020 16 H 0.066 0.934 17 N -0.378 5.378 18 C -0.145 4.145 19 H 0.074 0.926 20 H -0.025 1.025 21 H 0.017 0.983 22 H 0.152 0.848 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.095 0.905 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.720 -13.089 0.462 13.616 hybrid contribution -1.076 0.525 -1.454 1.884 sum 2.643 -12.564 -0.991 12.878 Atomic orbital electron populations 1.70089 1.07886 1.28132 1.51432 1.25994 0.95820 1.03521 0.94458 0.85343 0.78077 0.77399 0.79208 1.18971 1.20664 1.19324 1.21548 0.93850 0.91508 1.50833 0.91716 1.19206 0.90607 0.88995 0.92931 1.60659 1.20213 1.01341 1.48937 1.22411 0.95263 0.89608 0.96387 0.95732 1.22084 1.00117 0.96302 0.96532 1.22092 1.01476 0.93723 0.97176 1.22006 0.92734 0.91403 0.95809 0.93390 1.58683 1.38656 1.13006 1.27408 1.22584 0.99417 0.92967 0.99557 0.92564 1.02470 0.98338 0.84835 0.93533 0.92488 0.90706 0.90821 0.83564 0.83742 0.90462 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.98 45.05 29.54 68.60 2.03 47.08 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.54 -31.76 9.32 25.60 0.24 -31.52 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 9 C 0.21 11.78 5.29 85.56 0.45 12.23 16 10 N -0.68 -30.86 6.28 -489.89 -3.08 -33.93 16 11 C 0.07 2.76 3.17 46.02 0.15 2.91 16 12 H 0.02 0.98 7.88 -2.39 -0.02 0.97 16 13 C -0.11 -3.87 6.45 31.32 0.20 -3.67 16 14 C -0.11 -2.75 6.53 31.32 0.20 -2.55 16 15 C 0.09 2.17 3.99 45.99 0.18 2.36 16 16 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 17 N -0.85 -16.01 9.26 -164.21 -1.52 -17.53 16 18 C -0.11 -3.07 5.97 31.91 0.19 -2.88 16 19 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 20 H -0.04 -2.54 8.08 -2.38 -0.02 -2.56 16 21 H 0.00 -0.09 8.12 -2.38 -0.02 -0.11 16 22 H 0.33 14.31 8.46 -89.70 -0.76 13.55 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 25 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.35 5.20 9.07 -89.69 -0.81 4.38 16 28 H 0.35 5.49 9.06 -89.69 -0.81 4.68 16 29 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -65.59 249.43 -1.46 -67.04 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -1.25 Total: 17.50 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 2.08 Total: -22.66 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -4.31 Total: -108.97 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.59 -1.46 -67.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086398062.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.412 kcal (2) G-P(sol) polarization free energy of solvation -65.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds