Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.49371 * 2 1 4 4 C 1.53625 * 109.43329 * 120.21883 * 2 1 3 5 5 N 1.46921 * 108.54431 * 174.72466 * 4 2 1 6 6 C 1.36934 * 120.63093 * 126.37218 * 5 4 2 7 7 H 1.08000 * 120.00034 * 332.04535 * 6 5 4 8 8 C 1.38812 * 120.00282 * 152.04627 * 6 5 4 9 9 N 1.31621 * 119.99571 * 342.64270 * 8 6 5 10 10 Si 1.86801 * 120.00065 * 162.91965 * 8 6 5 11 11 H 1.48499 * 109.47065 * 179.72148 * 10 8 6 12 12 H 1.48495 * 109.46895 * 299.72315 * 10 8 6 13 13 H 1.48496 * 109.47025 * 59.72415 * 10 8 6 14 14 C 1.46925 * 118.73991 * 306.09306 * 5 4 2 15 15 C 1.53198 * 108.77140 * 53.86292 * 14 5 4 16 16 C 1.53038 * 109.31330 * 305.36224 * 15 14 5 17 17 H 1.09000 * 109.46247 * 301.34826 * 16 15 14 18 18 N 1.46902 * 109.46026 * 181.38774 * 16 15 14 19 19 H 1.08999 * 109.46971 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47262 * 300.06679 * 1 2 3 21 21 H 1.08999 * 109.46972 * 60.06866 * 1 2 3 22 22 H 1.09004 * 109.73719 * 54.98927 * 4 2 1 23 23 H 1.09001 * 109.66651 * 294.42577 * 4 2 1 24 24 H 0.97004 * 119.99553 * 180.02562 * 9 8 6 25 25 H 1.08997 * 109.58937 * 173.64726 * 14 5 4 26 26 H 1.08999 * 109.58823 * 293.93486 * 14 5 4 27 27 H 1.08996 * 109.49676 * 65.31836 * 15 14 5 28 28 H 1.09001 * 109.49364 * 185.41190 * 15 14 5 29 29 H 1.00898 * 110.99634 * 59.99986 * 18 16 15 30 30 H 1.00902 * 110.99589 * 183.95243 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7292 1.2519 5 7 3.5046 -0.8293 1.1694 6 6 4.2936 -0.3798 2.1944 7 1 3.9468 0.4199 2.8320 8 6 5.5391 -0.9519 2.4139 9 7 5.8278 -2.1225 1.8859 10 14 6.8026 -0.0642 3.4651 11 1 8.0388 -0.8826 3.5500 12 1 7.1203 1.2506 2.8523 13 1 6.2529 0.1451 4.8286 14 6 4.1053 -1.4267 -0.0310 15 6 3.5709 -0.6947 -1.2661 16 6 2.0408 -0.7228 -1.2485 17 1 1.6967 -1.7569 -1.2357 18 7 1.5252 -0.0505 -2.4486 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5149 0.8894 21 1 -0.3633 0.5128 -0.8906 22 1 1.6085 -1.7286 1.2981 23 1 1.7629 -0.1668 2.1432 24 1 6.6981 -2.5225 2.0396 25 1 5.1896 -1.3246 0.0135 26 1 3.8396 -2.4824 -0.0859 27 1 3.9160 0.3392 -1.2539 28 1 3.9335 -1.1892 -2.1673 29 1 1.8477 -0.5099 -3.2870 30 1 0.5176 0.0012 -2.4292 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086886804.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = -11.886535 kcal Electronic energy + Delta-G solvation = -11831.591303 eV Core-core repulsion = 9853.838176 eV Total energy + Delta-G solvation = -1977.753126 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.73848 -36.12491 -33.52549 -32.90430 -30.57772 -27.41914 -26.26039 -23.29891 -22.53550 -20.47274 -18.65454 -17.00081 -16.56790 -16.13784 -15.59412 -15.45864 -14.66537 -14.14893 -14.11402 -13.47765 -13.08076 -12.96564 -12.73372 -12.53999 -12.27212 -12.13237 -11.94648 -11.61962 -11.28940 -11.03966 -10.53528 -9.53985 -8.70472 -7.88910 -5.34341 1.45642 1.48732 1.55553 2.50605 3.24666 3.62147 3.70214 3.97121 4.08778 4.25068 4.46871 4.64468 4.75215 4.78986 4.95219 4.97436 5.00032 5.13501 5.24026 5.43037 5.44433 5.55200 5.62676 5.74434 6.31722 6.38097 6.71971 7.13024 7.84471 8.36638 9.17498 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.063667 B = 0.012152 C = 0.011152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.685664 B = 2303.654775 C = 2510.160127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.056 0.944 4 C 0.147 3.853 5 N -0.612 5.612 6 C -0.267 4.267 7 H 0.065 0.935 8 C -0.051 4.051 9 N -0.936 5.936 10 Si 0.969 3.031 11 H -0.292 1.292 12 H -0.279 1.279 13 H -0.274 1.274 14 C 0.177 3.823 15 C -0.120 4.120 16 C 0.111 3.889 17 H 0.024 0.976 18 N -0.846 5.846 19 H 0.055 0.945 20 H 0.060 0.940 21 H 0.073 0.927 22 H 0.013 0.987 23 H 0.053 0.947 24 H 0.251 0.749 25 H 0.054 0.946 26 H -0.005 1.005 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.345 0.655 30 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.481 2.995 -6.135 10.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.074 0.926 4 C 0.021 3.979 5 N -0.335 5.335 6 C -0.397 4.397 7 H 0.083 0.917 8 C -0.246 4.246 9 N -0.582 5.582 10 Si 0.796 3.204 11 H -0.218 1.218 12 H -0.205 1.205 13 H -0.199 1.199 14 C 0.051 3.949 15 C -0.160 4.160 16 C 0.000 4.000 17 H 0.042 0.958 18 N -0.378 5.378 19 H 0.074 0.926 20 H 0.079 0.921 21 H 0.092 0.908 22 H 0.031 0.969 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.013 0.987 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.159 0.841 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.945 3.534 -5.845 10.478 hybrid contribution 0.537 -0.860 0.466 1.116 sum -7.409 2.674 -5.379 9.538 Atomic orbital electron populations 1.21740 0.93219 1.01906 1.02618 1.21595 0.96475 0.99015 0.94303 0.92573 1.21205 0.83660 0.96578 0.96408 1.44339 1.01094 1.71621 1.16472 1.19506 0.99090 1.12215 1.08932 0.91699 1.25817 1.01687 0.96067 1.01065 1.70187 1.22091 1.16022 1.49882 0.85321 0.78286 0.77854 0.78893 1.21811 1.20479 1.19936 1.20581 0.97620 0.92301 0.84393 1.22017 0.95638 1.00325 0.98025 1.21045 0.94058 0.94310 0.90605 0.95806 1.58742 1.15801 1.59561 1.03733 0.92621 0.92064 0.90840 0.96930 0.92887 0.94032 0.92759 0.98656 0.93395 0.91746 0.84133 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.84 71.98 0.64 -2.91 16 2 C -0.09 -3.28 2.61 -10.57 -0.03 -3.30 16 3 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 4 C 0.15 6.39 5.83 86.51 0.50 6.90 16 5 N -0.61 -32.28 2.99 -698.26 -2.09 -34.37 16 6 C -0.27 -15.31 9.59 84.03 0.81 -14.51 16 7 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 8 C -0.05 -2.94 4.91 84.86 0.42 -2.52 16 9 N -0.94 -56.77 11.19 21.65 0.24 -56.53 16 10 Si 0.97 45.92 29.59 68.60 2.03 47.95 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 14 C 0.18 8.99 5.31 86.36 0.46 9.44 16 15 C -0.12 -4.84 5.66 30.67 0.17 -4.67 16 16 C 0.11 3.76 2.74 44.94 0.12 3.88 16 17 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 18 N -0.85 -22.35 9.21 -168.57 -1.55 -23.91 16 19 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.07 1.59 6.55 -2.39 -0.02 1.57 16 22 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.05 2.26 7.93 -2.39 -0.02 2.24 16 24 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.05 3.10 6.04 -2.39 -0.01 3.08 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.35 7.90 9.04 -89.70 -0.81 7.08 16 30 H 0.35 7.55 6.99 -89.69 -0.63 6.93 16 Total: -1.00 -64.20 237.64 1.41 -62.79 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -0.31 Total: 11.75 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 3.09 Total: -7.68 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.40 Total: -114.80 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -64.20 1.41 -62.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086886804.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.907 kcal (2) G-P(sol) polarization free energy of solvation -64.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds