Wall clock time and date at job start Mon Mar 30 2020 02:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49659 * 2 1 4 4 C 1.53039 * 109.52390 * 120.07625 * 2 1 3 5 5 C 1.53041 * 109.54080 * 181.33601 * 4 2 1 6 6 H 1.09001 * 109.49725 * 58.58603 * 5 4 2 7 7 N 1.46893 * 109.49975 * 178.68576 * 5 4 2 8 8 C 1.53628 * 109.24000 * 298.51585 * 5 4 2 9 9 N 1.46918 * 108.54533 * 54.85193 * 8 5 4 10 10 C 1.36934 * 120.62962 * 126.36553 * 9 8 5 11 11 H 1.08002 * 120.00108 * 331.64397 * 10 9 8 12 12 C 1.38815 * 120.00247 * 151.36288 * 10 9 8 13 13 N 1.31620 * 119.99517 * 343.23363 * 12 10 9 14 14 Si 1.86793 * 120.00533 * 163.23063 * 12 10 9 15 15 H 1.48505 * 109.47033 * 59.99848 * 14 12 10 16 16 H 1.48497 * 109.47426 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47018 * 300.00437 * 14 12 10 18 18 C 1.46922 * 118.74053 * 306.09673 * 9 8 5 19 19 H 1.08998 * 109.46621 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47242 * 300.06673 * 1 2 3 21 21 H 1.09006 * 109.46799 * 60.06897 * 1 2 3 22 22 H 1.09003 * 109.45997 * 301.35815 * 4 2 1 23 23 H 1.08997 * 109.45818 * 61.32967 * 4 2 1 24 24 H 1.00898 * 111.00240 * 179.97438 * 7 5 4 25 25 H 1.00905 * 111.00142 * 303.95316 * 7 5 4 26 26 H 1.09004 * 109.73757 * 295.11371 * 8 5 4 27 27 H 1.09005 * 109.66319 * 174.54867 * 8 5 4 28 28 H 0.97002 * 119.99925 * 179.97438 * 13 12 10 29 29 H 1.09004 * 109.58856 * 173.64867 * 18 9 8 30 30 H 1.09000 * 109.58688 * 294.06921 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7229 1.2482 5 6 3.5715 -0.6941 1.2655 6 1 3.9161 0.3400 1.2536 7 7 4.0607 -1.3605 2.4797 8 6 4.1058 -1.4305 0.0276 9 7 3.5048 -0.8281 -1.1700 10 6 4.2933 -0.3777 -2.1950 11 1 5.2962 -0.0317 -1.9929 12 6 3.8056 -0.3715 -3.4947 13 7 2.7430 -1.0847 -3.8022 14 14 4.6573 0.6491 -4.8070 15 1 6.0632 0.1935 -4.9535 16 1 3.9462 0.4857 -6.1003 17 1 4.6396 2.0801 -4.4102 18 6 2.0415 -0.7234 -1.2497 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5149 0.8894 21 1 -0.3633 0.5128 -0.8907 22 1 1.6588 -0.2245 2.1389 23 1 1.6981 -1.7573 1.2350 24 1 5.0691 -1.3548 2.5140 25 1 3.6681 -0.9378 3.3075 26 1 3.8351 -2.4850 0.0813 27 1 5.1903 -1.3313 -0.0184 28 1 2.4020 -1.0800 -4.7103 29 1 1.7634 -0.1577 -2.1390 30 1 1.6059 -1.7214 -1.2981 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087041567.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:36 Heat of formation + Delta-G solvation = 6.312548 kcal Electronic energy + Delta-G solvation = -11824.166985 eV Core-core repulsion = 9847.203030 eV Total energy + Delta-G solvation = -1976.963955 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.93377 -33.94139 -33.10109 -30.78829 -27.65168 -25.81764 -25.23741 -21.66479 -20.32934 -18.87278 -16.65138 -15.22850 -14.89253 -14.37256 -14.01617 -13.67600 -13.10290 -12.73435 -12.21274 -11.77811 -11.51193 -11.10160 -10.96908 -10.72781 -10.61336 -10.29862 -9.99699 -9.80441 -9.57063 -9.35736 -8.44748 -8.26130 -6.62333 -5.75622 -3.18497 3.39829 3.45301 3.46637 4.49664 4.90303 5.37228 5.54311 5.59870 5.65883 5.81813 5.95935 6.11246 6.28093 6.34519 6.47408 6.52463 6.64686 6.85021 6.87538 6.94681 7.03515 7.45013 7.58887 7.72584 7.81064 7.82612 8.49210 9.25010 9.88379 10.46001 11.32793 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.045704 B = 0.014010 C = 0.011611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.491863 B = 1998.035401 C = 2410.969805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 H 0.059 0.941 4 C -0.094 4.094 5 C 0.071 3.929 6 H 0.029 0.971 7 N -0.848 5.848 8 C 0.156 3.844 9 N -0.592 5.592 10 C -0.255 4.255 11 H 0.064 0.936 12 C 0.003 3.997 13 N -0.902 5.902 14 Si 0.903 3.097 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.284 1.284 18 C 0.178 3.822 19 H 0.050 0.950 20 H 0.041 0.959 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.061 0.939 24 H 0.335 0.665 25 H 0.331 0.669 26 H 0.026 0.974 27 H 0.048 0.952 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.258 2.165 8.207 8.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.140 4.140 3 H 0.078 0.922 4 C -0.132 4.132 5 C -0.042 4.042 6 H 0.047 0.953 7 N -0.377 5.377 8 C 0.029 3.971 9 N -0.315 5.315 10 C -0.384 4.384 11 H 0.081 0.919 12 C -0.196 4.196 13 N -0.546 5.546 14 Si 0.732 3.268 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.211 1.211 18 C 0.052 3.948 19 H 0.069 0.931 20 H 0.060 0.940 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.147 0.853 25 H 0.142 0.858 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -1.679 1.484 7.714 8.033 hybrid contribution 0.812 1.450 -0.435 1.718 sum -0.868 2.934 7.279 7.896 Atomic orbital electron populations 1.21706 0.96242 1.01138 1.00449 1.21826 0.94290 1.00086 0.97765 0.92231 1.21452 0.94347 1.00557 0.96865 1.22046 0.95582 0.95567 0.90979 0.95278 1.58728 1.12507 1.62115 1.04353 1.20907 0.95907 0.94629 0.85684 1.44023 1.01934 1.69439 1.16074 1.19139 0.98019 1.35471 0.85791 0.91853 1.25049 0.98563 0.98979 0.96977 1.70034 1.25676 1.40073 1.18815 0.86368 0.78955 0.80445 0.80988 1.20875 1.21592 1.21063 1.20825 0.82814 0.96945 0.94198 0.93109 0.94004 0.92908 0.94149 0.92050 0.85283 0.85773 0.95561 0.93381 0.93584 0.89616 0.96371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.20 37.16 0.34 -1.97 16 2 C -0.12 -2.36 2.87 -90.50 -0.26 -2.62 16 3 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.09 -1.72 4.71 -26.69 -0.13 -1.84 16 5 C 0.07 1.32 3.41 -67.37 -0.23 1.09 16 6 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 7 N -0.85 -12.92 9.25 -4.37 -0.04 -12.96 16 8 C 0.16 3.49 6.12 -3.49 -0.02 3.47 16 9 N -0.59 -15.44 2.99 -172.06 -0.51 -15.95 16 10 C -0.25 -7.18 9.58 -15.06 -0.14 -7.32 16 11 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 12 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 13 N -0.90 -26.64 11.20 55.49 0.62 -26.01 16 14 Si 0.90 21.97 29.59 -169.99 -5.03 16.95 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.18 4.39 4.58 -3.71 -0.02 4.37 16 19 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.34 4.59 9.04 -39.29 -0.36 4.23 16 25 H 0.33 4.29 8.99 -39.29 -0.35 3.94 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 241.25 15.07 3.64 3.64 Total: -1.00 -29.71 241.25 -6.66 -36.37 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.79 Total: 2.80 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.54 Total: -4.83 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.07 Total: -54.92 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.71 -6.66 -36.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087041567.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.681 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds