Wall clock time and date at job start Mon Mar 30 2020 02:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49659 * 2 1 4 4 C 1.53039 * 109.52390 * 120.07625 * 2 1 3 5 5 C 1.53041 * 109.54080 * 181.33601 * 4 2 1 6 6 H 1.09001 * 109.49725 * 58.58603 * 5 4 2 7 7 N 1.46893 * 109.49975 * 178.68576 * 5 4 2 8 8 C 1.53628 * 109.24000 * 298.51585 * 5 4 2 9 9 N 1.46918 * 108.54533 * 54.85193 * 8 5 4 10 10 C 1.36934 * 120.62962 * 126.36553 * 9 8 5 11 11 H 1.08002 * 120.00108 * 331.64397 * 10 9 8 12 12 C 1.38815 * 120.00247 * 151.36288 * 10 9 8 13 13 N 1.31620 * 119.99517 * 343.23363 * 12 10 9 14 14 Si 1.86793 * 120.00533 * 163.23063 * 12 10 9 15 15 H 1.48505 * 109.47033 * 59.99848 * 14 12 10 16 16 H 1.48497 * 109.47426 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47018 * 300.00437 * 14 12 10 18 18 C 1.46922 * 118.74053 * 306.09673 * 9 8 5 19 19 H 1.08998 * 109.46621 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47242 * 300.06673 * 1 2 3 21 21 H 1.09006 * 109.46799 * 60.06897 * 1 2 3 22 22 H 1.09003 * 109.45997 * 301.35815 * 4 2 1 23 23 H 1.08997 * 109.45818 * 61.32967 * 4 2 1 24 24 H 1.00898 * 111.00240 * 179.97438 * 7 5 4 25 25 H 1.00905 * 111.00142 * 303.95316 * 7 5 4 26 26 H 1.09004 * 109.73757 * 295.11371 * 8 5 4 27 27 H 1.09005 * 109.66319 * 174.54867 * 8 5 4 28 28 H 0.97002 * 119.99925 * 179.97438 * 13 12 10 29 29 H 1.09004 * 109.58856 * 173.64867 * 18 9 8 30 30 H 1.09000 * 109.58688 * 294.06921 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7229 1.2482 5 6 3.5715 -0.6941 1.2655 6 1 3.9161 0.3400 1.2536 7 7 4.0607 -1.3605 2.4797 8 6 4.1058 -1.4305 0.0276 9 7 3.5048 -0.8281 -1.1700 10 6 4.2933 -0.3777 -2.1950 11 1 5.2962 -0.0317 -1.9929 12 6 3.8056 -0.3715 -3.4947 13 7 2.7430 -1.0847 -3.8022 14 14 4.6573 0.6491 -4.8070 15 1 6.0632 0.1935 -4.9535 16 1 3.9462 0.4857 -6.1003 17 1 4.6396 2.0801 -4.4102 18 6 2.0415 -0.7234 -1.2497 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5149 0.8894 21 1 -0.3633 0.5128 -0.8907 22 1 1.6588 -0.2245 2.1389 23 1 1.6981 -1.7573 1.2350 24 1 5.0691 -1.3548 2.5140 25 1 3.6681 -0.9378 3.3075 26 1 3.8351 -2.4850 0.0813 27 1 5.1903 -1.3313 -0.0184 28 1 2.4020 -1.0800 -4.7103 29 1 1.7634 -0.1577 -2.1390 30 1 1.6059 -1.7214 -1.2981 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087041567.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:36 Heat of formation + Delta-G solvation = -14.637792 kcal Electronic energy + Delta-G solvation = -11825.075460 eV Core-core repulsion = 9847.203030 eV Total energy + Delta-G solvation = -1977.872430 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.63158 -35.72988 -34.70759 -32.78705 -29.18813 -27.49615 -27.19404 -23.56712 -21.91099 -20.57610 -18.70584 -16.96228 -16.48451 -15.93759 -15.82557 -15.39646 -14.81621 -14.37678 -14.03462 -13.34102 -13.10655 -12.93996 -12.78862 -12.54039 -12.24084 -12.19350 -11.92258 -11.50457 -11.29675 -11.11145 -10.55386 -9.57070 -8.70472 -7.89483 -5.36603 1.45163 1.47903 1.54998 2.48939 3.24180 3.45499 3.85619 4.03446 4.09517 4.27062 4.41912 4.59512 4.72884 4.86159 4.91784 4.97507 5.06709 5.16358 5.26239 5.39349 5.41690 5.52887 5.65511 5.77379 6.25818 6.39331 6.71173 7.12482 7.83038 8.35861 9.16754 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.045704 B = 0.014010 C = 0.011611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.491863 B = 1998.035401 C = 2410.969805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.111 4.111 3 H 0.054 0.946 4 C -0.089 4.089 5 C 0.085 3.915 6 H 0.025 0.975 7 N -0.844 5.844 8 C 0.153 3.847 9 N -0.612 5.612 10 C -0.271 4.271 11 H 0.065 0.935 12 C -0.049 4.049 13 N -0.934 5.934 14 Si 0.970 3.030 15 H -0.274 1.274 16 H -0.292 1.292 17 H -0.277 1.277 18 C 0.185 3.815 19 H 0.051 0.949 20 H 0.074 0.926 21 H 0.047 0.953 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.346 0.654 25 H 0.350 0.650 26 H 0.010 0.990 27 H 0.047 0.953 28 H 0.251 0.749 29 H 0.052 0.948 30 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 3.093 9.664 10.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.132 4.132 3 H 0.072 0.928 4 C -0.127 4.127 5 C -0.028 4.028 6 H 0.043 0.957 7 N -0.376 5.376 8 C 0.027 3.973 9 N -0.335 5.335 10 C -0.401 4.401 11 H 0.083 0.917 12 C -0.245 4.245 13 N -0.580 5.580 14 Si 0.798 3.202 15 H -0.200 1.200 16 H -0.218 1.218 17 H -0.203 1.203 18 C 0.059 3.941 19 H 0.070 0.930 20 H 0.093 0.907 21 H 0.066 0.934 22 H 0.093 0.907 23 H 0.071 0.929 24 H 0.159 0.841 25 H 0.164 0.836 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -1.563 2.414 9.218 9.656 hybrid contribution 0.811 1.099 -0.854 1.611 sum -0.752 3.513 8.364 9.103 Atomic orbital electron populations 1.21659 0.93713 1.01700 1.01855 1.21668 0.96406 0.99004 0.96077 0.92785 1.21402 0.93927 1.00153 0.97174 1.21696 0.95854 0.94740 0.90532 0.95657 1.58587 1.13531 1.61654 1.03783 1.21002 0.95914 0.94076 0.86332 1.44306 1.02430 1.69941 1.16806 1.19492 0.98457 1.35398 0.86765 0.91723 1.25857 0.99474 1.00096 0.99053 1.70198 1.27242 1.41537 1.18994 0.85303 0.78045 0.78933 0.77942 1.19994 1.21777 1.20281 1.20654 0.82430 0.95483 0.95492 0.92996 0.90735 0.93368 0.90658 0.92899 0.84074 0.83637 0.97171 0.93487 0.93975 0.92958 0.99062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.20 71.98 0.66 -3.50 16 2 C -0.11 -4.29 2.87 -10.72 -0.03 -4.32 16 3 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.09 -3.01 4.71 30.62 0.14 -2.87 16 5 C 0.08 2.99 3.41 45.14 0.15 3.14 16 6 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 7 N -0.84 -23.29 9.25 -167.75 -1.55 -24.84 16 8 C 0.15 6.84 6.12 86.51 0.53 7.37 16 9 N -0.61 -32.39 2.99 -698.27 -2.08 -34.47 16 10 C -0.27 -15.49 9.58 84.03 0.81 -14.69 16 11 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 12 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 13 N -0.93 -56.70 11.20 21.65 0.24 -56.45 16 14 Si 0.97 45.60 29.59 68.60 2.03 47.63 16 15 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 C 0.18 9.33 4.58 86.36 0.40 9.72 16 19 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 20 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.35 8.54 9.04 -89.70 -0.81 7.73 16 25 H 0.35 7.72 8.99 -89.69 -0.81 6.92 16 26 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.05 2.05 7.93 -2.38 -0.02 2.03 16 28 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.05 2.96 6.07 -2.38 -0.01 2.95 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 Total: -1.00 -64.37 241.25 1.21 -63.15 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -0.50 Total: 12.53 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 3.08 Total: -7.54 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -3.39 Total: -115.77 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -64.37 1.21 -63.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087041567.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.517 kcal (2) G-P(sol) polarization free energy of solvation -64.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds