Wall clock time and date at job start Mon Mar 30 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 110.99894 * 2 1 4 4 C 1.50702 * 109.46770 * 293.94717 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72214 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.46909 * 110.99555 * 123.94516 * 2 1 3 13 13 C 1.53781 * 113.61002 * 155.18292 * 12 2 1 14 14 C 1.53952 * 87.01967 * 220.05035 * 13 12 2 15 15 N 1.46900 * 113.66626 * 139.93714 * 14 13 12 16 16 C 1.53774 * 87.11169 * 25.36551 * 14 13 12 17 17 H 1.09000 * 109.46747 * 60.00541 * 1 2 3 18 18 H 1.09001 * 109.46627 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47329 * 300.00238 * 1 2 3 20 20 H 1.09004 * 109.47258 * 173.95041 * 3 2 1 21 21 H 1.08994 * 109.47601 * 53.94633 * 3 2 1 22 22 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 23 23 H 1.08992 * 112.85008 * 286.38416 * 12 2 1 24 24 H 1.09001 * 113.61807 * 334.57365 * 13 12 2 25 25 H 1.09000 * 113.60912 * 105.47101 * 13 12 2 26 26 H 1.09000 * 113.61615 * 270.80280 * 14 13 12 27 27 H 1.00898 * 111.00136 * 82.43382 * 15 14 13 28 28 H 1.00896 * 111.00251 * 206.39729 * 15 14 13 29 29 H 1.08995 * 113.61554 * 220.09118 * 16 14 13 30 30 H 1.09002 * 113.61871 * 89.18356 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0741 1.5113 -2.0486 6 6 2.0224 3.3511 -1.5265 7 7 2.7075 4.0035 -0.6130 8 14 1.5714 4.1909 -3.1329 9 1 0.0937 4.2232 -3.2769 10 1 2.0994 5.5789 -3.1310 11 1 2.1631 3.4383 -4.2682 12 6 1.9954 -0.7659 1.1378 13 6 3.4102 -1.3217 0.9044 14 6 2.9358 -2.6044 1.6114 15 7 3.4326 -3.8389 0.9891 16 6 1.5109 -2.2249 1.1752 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3632 -1.0277 0.0005 19 1 -0.3634 0.5139 0.8899 20 1 3.0798 1.3444 0.1083 21 1 1.5611 1.9274 0.8308 22 1 2.9789 4.9209 -0.7736 23 1 1.8826 -0.2438 2.0879 24 1 3.6539 -1.4678 -0.1479 25 1 4.1860 -0.7834 1.4488 26 1 3.0810 -2.5868 2.6916 27 1 4.3683 -4.0503 1.3019 28 1 2.8082 -4.6109 1.1684 29 1 0.7557 -2.4147 1.9378 30 1 1.2343 -2.6183 0.1970 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087653172.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:10 Heat of formation + Delta-G solvation = 20.683909 kcal Electronic energy + Delta-G solvation = -11363.534225 eV Core-core repulsion = 9387.193459 eV Total energy + Delta-G solvation = -1976.340766 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.89920 -35.09575 -32.45046 -31.02339 -27.29664 -25.58535 -24.56797 -22.50262 -20.25981 -18.78466 -16.30117 -15.74625 -15.45371 -14.67824 -14.54246 -13.92407 -13.36232 -12.75273 -12.00344 -11.85631 -11.55970 -11.11934 -10.92681 -10.71834 -10.66891 -10.43445 -10.35425 -9.93570 -9.54990 -9.11890 -8.59450 -8.37841 -7.16029 -5.97425 -3.98324 3.37134 3.40626 3.44123 4.46146 4.64083 4.88778 5.12276 5.21002 5.34365 5.38213 5.41879 5.87065 6.02072 6.19849 6.30136 6.38310 6.45894 6.69361 6.73888 6.83901 7.34626 7.39972 7.42208 7.51026 7.87607 8.18066 8.28867 8.64344 9.09416 9.65472 11.13592 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.069636 B = 0.009094 C = 0.008779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.997216 B = 3078.090322 C = 3188.494764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.527 5.527 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.056 3.944 13 C -0.108 4.108 14 C 0.054 3.946 15 N -0.836 5.836 16 C -0.121 4.121 17 H 0.072 0.928 18 H 0.045 0.955 19 H 0.008 0.992 20 H 0.030 0.970 21 H -0.012 1.012 22 H 0.261 0.739 23 H 0.051 0.949 24 H 0.098 0.902 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.336 0.664 28 H 0.336 0.664 29 H 0.054 0.946 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 -11.027 4.508 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.252 5.252 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.054 4.054 13 C -0.146 4.146 14 C -0.058 4.058 15 N -0.365 5.365 16 C -0.160 4.160 17 H 0.090 0.910 18 H 0.063 0.937 19 H 0.027 0.973 20 H 0.048 0.952 21 H 0.006 0.994 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.116 0.884 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.073 0.927 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.807 -10.669 3.424 11.234 hybrid contribution -0.394 0.671 1.010 1.275 sum -1.200 -9.998 4.434 11.003 Atomic orbital electron populations 1.22155 0.89146 0.99086 1.00556 1.62342 1.06612 1.17767 1.38448 1.19698 0.95522 0.81629 0.96369 1.21154 1.34753 0.96782 1.01786 0.91936 1.24995 0.95381 0.97363 0.96956 1.69958 1.38550 1.11369 1.34128 0.86560 0.78666 0.78306 0.83862 1.20328 1.21391 1.20155 1.22842 0.96317 0.92753 0.93448 1.23008 0.96053 0.93518 1.02025 1.22778 0.97214 0.90630 0.95192 1.58821 1.06489 1.05632 1.65534 1.23088 0.94555 0.96539 1.01768 0.90976 0.93667 0.97308 0.95158 0.99395 0.92950 0.93135 0.88377 0.92503 0.92853 0.85185 0.85181 0.92719 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.18 60.07 0.55 1.35 16 2 N -0.53 -11.90 4.71 -235.34 -1.11 -13.01 16 3 C 0.19 5.22 4.69 -4.98 -0.02 5.20 16 4 C -0.51 -14.65 8.52 -34.44 -0.29 -14.94 16 5 H 0.06 1.79 7.10 -52.49 -0.37 1.41 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.06 1.06 3.18 -66.89 -0.21 0.85 16 13 C -0.11 -1.88 7.40 -25.83 -0.19 -2.07 16 14 C 0.05 0.75 4.96 -66.81 -0.33 0.42 16 15 N -0.84 -10.17 9.58 -3.90 -0.04 -10.21 16 16 C -0.12 -1.86 6.36 -25.92 -0.16 -2.02 16 17 H 0.07 1.55 6.86 -51.93 -0.36 1.20 16 18 H 0.04 0.78 7.00 -51.93 -0.36 0.42 16 19 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 20 H 0.03 0.87 7.85 -51.93 -0.41 0.46 16 21 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.34 3.47 9.08 -39.29 -0.36 3.12 16 28 H 0.34 3.42 9.07 -39.29 -0.36 3.06 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.55 7.98 -51.93 -0.41 1.14 16 LS Contribution 248.38 15.07 3.74 3.74 Total: -1.00 -30.65 248.38 -7.17 -37.82 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.72 Total: 0.94 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.76 Total: -9.75 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.41 Total: -49.82 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.65 -7.17 -37.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087653172.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.506 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds