Wall clock time and date at job start Mon Mar 30 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 110.99894 * 2 1 4 4 C 1.50702 * 109.46770 * 293.94717 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72214 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.46909 * 110.99555 * 123.94516 * 2 1 3 13 13 C 1.53781 * 113.61002 * 155.18292 * 12 2 1 14 14 C 1.53952 * 87.01967 * 220.05035 * 13 12 2 15 15 N 1.46900 * 113.66626 * 139.93714 * 14 13 12 16 16 C 1.53774 * 87.11169 * 25.36551 * 14 13 12 17 17 H 1.09000 * 109.46747 * 60.00541 * 1 2 3 18 18 H 1.09001 * 109.46627 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47329 * 300.00238 * 1 2 3 20 20 H 1.09004 * 109.47258 * 173.95041 * 3 2 1 21 21 H 1.08994 * 109.47601 * 53.94633 * 3 2 1 22 22 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 23 23 H 1.08992 * 112.85008 * 286.38416 * 12 2 1 24 24 H 1.09001 * 113.61807 * 334.57365 * 13 12 2 25 25 H 1.09000 * 113.60912 * 105.47101 * 13 12 2 26 26 H 1.09000 * 113.61615 * 270.80280 * 14 13 12 27 27 H 1.00898 * 111.00136 * 82.43382 * 15 14 13 28 28 H 1.00896 * 111.00251 * 206.39729 * 15 14 13 29 29 H 1.08995 * 113.61554 * 220.09118 * 16 14 13 30 30 H 1.09002 * 113.61871 * 89.18356 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0741 1.5113 -2.0486 6 6 2.0224 3.3511 -1.5265 7 7 2.7075 4.0035 -0.6130 8 14 1.5714 4.1909 -3.1329 9 1 0.0937 4.2232 -3.2769 10 1 2.0994 5.5789 -3.1310 11 1 2.1631 3.4383 -4.2682 12 6 1.9954 -0.7659 1.1378 13 6 3.4102 -1.3217 0.9044 14 6 2.9358 -2.6044 1.6114 15 7 3.4326 -3.8389 0.9891 16 6 1.5109 -2.2249 1.1752 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3632 -1.0277 0.0005 19 1 -0.3634 0.5139 0.8899 20 1 3.0798 1.3444 0.1083 21 1 1.5611 1.9274 0.8308 22 1 2.9789 4.9209 -0.7736 23 1 1.8826 -0.2438 2.0879 24 1 3.6539 -1.4678 -0.1479 25 1 4.1860 -0.7834 1.4488 26 1 3.0810 -2.5868 2.6916 27 1 4.3683 -4.0503 1.3019 28 1 2.8082 -4.6109 1.1684 29 1 0.7557 -2.4147 1.9378 30 1 1.2343 -2.6183 0.1970 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087653172.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:10 Heat of formation + Delta-G solvation = -2.893618 kcal Electronic energy + Delta-G solvation = -11364.556623 eV Core-core repulsion = 9387.193459 eV Total energy + Delta-G solvation = -1977.363164 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.30928 -36.80218 -34.52013 -32.29926 -29.30968 -27.26390 -26.04075 -24.31741 -21.90468 -20.18297 -18.49246 -17.14271 -16.70361 -16.37349 -16.09439 -15.50515 -15.14807 -14.48342 -13.88591 -13.36258 -13.24938 -12.95538 -12.73158 -12.39194 -12.27788 -12.06836 -11.98101 -11.81147 -11.15972 -11.01466 -10.61103 -9.58340 -9.00160 -8.20566 -6.31109 1.40355 1.44380 1.52228 2.40454 3.11485 3.31186 3.63630 3.79202 3.89064 4.00773 4.09399 4.48987 4.62073 4.72769 4.82672 4.94807 5.05861 5.09795 5.15332 5.25925 5.39844 5.42267 5.67659 6.07714 6.34847 6.36810 6.70210 6.70907 6.85482 7.38689 8.90585 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.069636 B = 0.009094 C = 0.008779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.997216 B = 3078.090322 C = 3188.494764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.537 5.537 3 C 0.210 3.790 4 C -0.527 4.527 5 H 0.063 0.937 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.972 3.028 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.038 3.962 13 C -0.116 4.116 14 C 0.076 3.924 15 N -0.843 5.843 16 C -0.106 4.106 17 H 0.055 0.945 18 H 0.081 0.919 19 H 0.006 0.994 20 H 0.001 0.999 21 H -0.043 1.043 22 H 0.265 0.735 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.349 0.651 28 H 0.352 0.648 29 H 0.080 0.920 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -12.349 4.212 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.261 5.261 3 C 0.084 3.916 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.796 3.204 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.193 1.193 12 C -0.071 4.071 13 C -0.155 4.155 14 C -0.036 4.036 15 N -0.375 5.375 16 C -0.144 4.144 17 H 0.074 0.926 18 H 0.099 0.901 19 H 0.025 0.975 20 H 0.019 0.981 21 H -0.025 1.025 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.162 0.838 28 H 0.166 0.834 29 H 0.099 0.901 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.518 -12.031 3.137 12.525 hybrid contribution -0.146 1.046 1.142 1.555 sum -1.664 -10.985 4.279 11.906 Atomic orbital electron populations 1.22161 0.87755 1.01078 0.99615 1.62269 1.07987 1.15078 1.40744 1.19317 0.93617 0.83973 0.94728 1.21478 1.35051 0.97502 1.02464 0.91911 1.25962 0.94981 0.98040 1.00840 1.70092 1.39397 1.11821 1.36322 0.85405 0.78892 0.77141 0.78986 1.19096 1.20682 1.19346 1.23074 0.97844 0.94298 0.91877 1.23004 0.95303 0.96077 1.01072 1.22539 0.95446 0.89775 0.95837 1.58684 1.07655 1.05512 1.65664 1.22974 0.96130 0.92949 1.02312 0.92636 0.90075 0.97523 0.98050 1.02504 0.92668 0.93656 0.90763 0.92980 0.90710 0.83790 0.83410 0.90137 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.69 9.18 127.69 1.17 2.86 16 2 N -0.54 -24.50 4.71 -898.49 -4.23 -28.73 16 3 C 0.21 11.80 4.69 85.56 0.40 12.20 16 4 C -0.53 -31.10 8.52 25.60 0.22 -30.88 16 5 H 0.06 3.62 7.10 -2.91 -0.02 3.60 16 6 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 7 N -0.94 -57.96 13.29 21.45 0.28 -57.68 16 8 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 C 0.04 1.44 3.18 45.44 0.14 1.58 16 13 C -0.12 -4.03 7.40 31.18 0.23 -3.80 16 14 C 0.08 1.94 4.96 45.50 0.23 2.16 16 15 N -0.84 -18.15 9.58 -166.26 -1.59 -19.74 16 16 C -0.11 -2.96 6.36 31.12 0.20 -2.76 16 17 H 0.05 2.38 6.86 -2.39 -0.02 2.37 16 18 H 0.08 2.65 7.00 -2.39 -0.02 2.63 16 19 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 20 H 0.00 0.08 7.85 -2.38 -0.02 0.06 16 21 H -0.04 -2.60 8.12 -2.39 -0.02 -2.62 16 22 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 27 H 0.35 6.24 9.08 -89.70 -0.81 5.43 16 28 H 0.35 5.93 9.07 -89.70 -0.81 5.12 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 2.64 7.98 -2.39 -0.02 2.62 16 Total: -1.00 -66.68 248.38 -0.97 -67.65 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -0.50 Total: 9.30 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 3.05 Total: -18.20 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -5.54 Total: -106.15 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -66.68 -0.97 -67.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087653172.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.751 kcal (2) G-P(sol) polarization free energy of solvation -66.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds