Wall clock time and date at job start Mon Mar 30 2020 01:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46992 * 2 1 4 4 H 1.08997 * 109.47544 * 304.96960 * 3 2 1 5 5 C 1.53097 * 109.48843 * 184.94545 * 3 2 1 6 6 C 1.53180 * 109.21119 * 182.43325 * 5 3 2 7 7 H 1.09005 * 109.49724 * 297.04659 * 6 5 3 8 8 C 1.50703 * 109.59389 * 176.78302 * 6 5 3 9 9 H 1.07994 * 120.00197 * 0.41395 * 8 6 5 10 10 C 1.37883 * 119.99782 * 180.41384 * 8 6 5 11 11 N 1.31517 * 119.99769 * 179.97438 * 10 8 6 12 12 Si 1.86796 * 119.99983 * 0.02562 * 10 8 6 13 13 H 1.48504 * 109.47476 * 89.99775 * 12 10 8 14 14 H 1.48499 * 109.47044 * 209.99856 * 12 10 8 15 15 H 1.48504 * 109.47092 * 329.99292 * 12 10 8 16 16 C 1.53177 * 109.03525 * 56.88485 * 6 5 3 17 17 C 1.53098 * 109.21356 * 303.11207 * 16 6 5 18 18 O 1.42898 * 109.48527 * 64.99632 * 3 2 1 19 19 H 1.08998 * 109.46915 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47472 * 300.00796 * 1 2 3 21 21 H 1.09007 * 109.46738 * 60.00802 * 1 2 3 22 22 H 1.08996 * 109.47472 * 239.99204 * 2 1 3 23 23 H 1.09007 * 109.46738 * 119.99198 * 2 1 3 24 24 H 1.09002 * 109.52138 * 302.30346 * 5 3 2 25 25 H 1.09005 * 109.52063 * 62.42754 * 5 3 2 26 26 H 0.97000 * 119.99567 * 180.02562 * 11 10 8 27 27 H 1.09002 * 109.52487 * 183.17418 * 16 6 5 28 28 H 1.09004 * 109.52023 * 63.05037 * 16 6 5 29 29 H 1.08999 * 109.47354 * 177.55660 * 17 16 6 30 30 H 1.08999 * 109.48099 * 297.59428 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6058 1.9815 -0.8421 5 6 3.5659 1.4449 -0.1244 6 6 4.0745 2.8884 -0.0626 7 1 3.6819 3.4491 -0.9110 8 6 5.5809 2.8958 -0.1050 9 1 6.1237 1.9649 -0.1763 10 6 6.2662 4.0911 -0.0526 11 7 7.5808 4.0975 -0.0891 12 14 5.3274 5.7013 0.0714 13 1 5.1187 6.0438 1.5012 14 1 6.1062 6.7803 -0.5876 15 1 4.0109 5.5597 -0.6010 16 6 3.5954 3.5315 1.2424 17 6 2.0683 3.4486 1.3140 18 8 1.6620 2.0818 1.2209 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.9990 0.8716 0.6953 25 1 3.8545 0.9962 -1.0750 26 1 8.0629 4.9384 -0.0519 27 1 3.9051 4.5762 1.2689 28 1 4.0291 3.0014 2.0904 29 1 1.7257 3.8660 2.2609 30 1 1.6345 4.0138 0.4891 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107398370.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:14 Heat of formation + Delta-G solvation = -87.286538 kcal Electronic energy + Delta-G solvation = -11750.141963 eV Core-core repulsion = 9736.826496 eV Total energy + Delta-G solvation = -2013.315467 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.39601 -36.01073 -34.79784 -33.63846 -30.67878 -28.18772 -24.97802 -24.12627 -22.00238 -20.96705 -18.86498 -17.29223 -17.23632 -16.02767 -15.61670 -15.34351 -14.93419 -14.54083 -14.31881 -13.89288 -13.14865 -12.93408 -12.87236 -12.47360 -12.16858 -12.00570 -11.78070 -11.66378 -11.54223 -11.15632 -10.92962 -10.69940 -10.16376 -8.33344 -6.37672 1.27092 1.32627 1.43548 2.29496 2.91738 3.01465 3.87109 4.09479 4.17030 4.28129 4.30309 4.36100 4.50446 4.62845 4.69298 4.79557 4.89030 4.96651 5.09179 5.15563 5.24674 5.28909 5.42480 5.51159 5.62756 5.69708 6.26641 6.37425 6.68851 7.27724 8.83718 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.065754 B = 0.012471 C = 0.011092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.729096 B = 2244.725922 C = 2523.775807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C 0.089 3.911 4 H 0.059 0.941 5 C -0.124 4.124 6 C 0.008 3.992 7 H 0.025 0.975 8 C -0.521 4.521 9 H 0.030 0.970 10 C 0.008 3.992 11 N -0.951 5.951 12 Si 0.952 3.048 13 H -0.264 1.264 14 H -0.297 1.297 15 H -0.244 1.244 16 C -0.156 4.156 17 C 0.065 3.935 18 O -0.388 6.388 19 H 0.068 0.932 20 H 0.051 0.949 21 H 0.056 0.944 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.266 0.734 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.686 -2.723 0.654 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C 0.031 3.969 4 H 0.077 0.923 5 C -0.162 4.162 6 C -0.011 4.011 7 H 0.043 0.957 8 C -0.559 4.559 9 H 0.048 0.952 10 C -0.189 4.189 11 N -0.591 5.591 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.225 1.225 15 H -0.168 1.168 16 C -0.194 4.194 17 C -0.012 4.012 18 O -0.307 6.307 19 H 0.087 0.913 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.644 -2.734 0.798 14.918 hybrid contribution 0.861 0.925 -0.115 1.269 sum -13.783 -1.809 0.684 13.918 Atomic orbital electron populations 1.21677 0.94146 1.02210 1.01951 1.21567 0.97442 0.93108 1.02980 1.22301 0.92962 0.94931 0.86683 0.92298 1.22048 0.95691 0.97216 1.01264 1.19181 0.93839 0.94478 0.93558 0.95662 1.21370 0.91572 0.93111 1.49822 0.95163 1.25966 0.95536 1.03220 0.94191 1.70061 1.08426 1.28013 1.52645 0.85791 0.79291 0.78203 0.78904 1.18989 1.22465 1.16792 1.22533 0.96896 0.99808 1.00157 1.22641 0.92862 0.83015 1.02682 1.87805 1.78282 1.25106 1.39546 0.91284 0.92973 0.92452 0.89535 0.91819 0.93349 0.91839 0.92519 0.93445 0.92704 0.87245 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.81 71.98 0.71 -2.36 16 2 C -0.11 -2.96 5.64 30.60 0.17 -2.79 16 3 C 0.09 2.90 2.64 30.63 0.08 2.98 16 4 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 5 C -0.12 -5.01 4.65 30.69 0.14 -4.87 16 6 C 0.01 0.39 1.77 -11.42 -0.02 0.37 16 7 H 0.03 1.19 7.22 -2.38 -0.02 1.17 16 8 C -0.52 -30.42 9.15 25.60 0.23 -30.18 16 9 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 10 C 0.01 0.45 5.45 84.66 0.46 0.91 16 11 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 12 Si 0.95 45.08 24.34 68.60 1.67 46.75 16 13 H -0.26 -11.83 6.90 99.48 0.69 -11.14 16 14 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 15 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 16 C -0.16 -6.62 4.86 30.69 0.15 -6.47 16 17 C 0.06 2.17 6.84 72.01 0.49 2.66 16 18 O -0.39 -13.36 9.94 -148.98 -1.48 -14.84 16 19 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 20 H 0.05 1.21 7.82 -2.39 -0.02 1.19 16 21 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 26 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 27 H 0.05 2.04 3.37 -2.39 -0.01 2.04 16 28 H 0.05 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -65.50 235.74 3.92 -61.58 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.01 Total: 6.46 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 2.42 Total: -39.76 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.30 Total: -60.20 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.48 Total: -14.84 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.67 Total: 46.75 kcal Total: -65.50 3.92 -61.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107398370.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.704 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds