Wall clock time and date at job start Mon Mar 30 2020 01:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09002 * 109.48476 * 304.98213 * 3 2 1 5 5 C 1.53088 * 109.48666 * 184.94317 * 3 2 1 6 6 C 1.53179 * 109.16895 * 182.41133 * 5 3 2 7 7 H 1.08997 * 109.54598 * 176.84695 * 6 5 3 8 8 C 1.50698 * 109.53916 * 297.11479 * 6 5 3 9 9 H 1.07999 * 120.00729 * 359.55576 * 8 6 5 10 10 C 1.37880 * 119.99737 * 179.55187 * 8 6 5 11 11 N 1.31515 * 120.00099 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 119.99934 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47503 * 60.00155 * 12 10 8 14 14 H 1.48498 * 109.47088 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47180 * 300.00039 * 12 10 8 16 16 C 1.53177 * 109.03563 * 56.97590 * 6 5 3 17 17 C 1.53087 * 109.16633 * 303.02693 * 16 6 5 18 18 O 1.42903 * 109.47732 * 65.00122 * 3 2 1 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 1.09000 * 109.51949 * 302.31856 * 5 3 2 25 25 H 1.09003 * 109.52230 * 62.50031 * 5 3 2 26 26 H 0.97000 * 119.99667 * 179.97438 * 11 10 8 27 27 H 1.09000 * 109.52179 * 183.11550 * 16 6 5 28 28 H 1.09005 * 109.57231 * 62.95805 * 16 6 5 29 29 H 1.09003 * 109.48191 * 297.62118 * 17 16 6 30 30 H 1.09006 * 109.48106 * 177.58773 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9817 -0.8419 5 6 3.5658 1.4446 -0.1244 6 6 4.0734 2.8886 -0.0630 7 1 5.1629 2.8938 -0.0947 8 6 3.5295 3.6643 -1.2349 9 1 2.8916 3.1758 -1.9567 10 6 3.8460 4.9977 -1.3856 11 7 4.6230 5.5926 -0.5070 12 14 3.1711 5.9595 -2.8379 13 1 1.6869 5.9459 -2.7940 14 1 3.6559 7.3615 -2.7714 15 1 3.6346 5.3355 -4.1033 16 6 3.5957 3.5310 1.2429 17 6 2.0687 3.4483 1.3145 18 8 1.6621 2.0815 1.2210 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 3.9989 0.8712 0.6953 25 1 3.8544 0.9971 -1.0755 26 1 4.8460 6.5306 -0.6133 27 1 3.9056 4.5757 1.2695 28 1 4.0293 3.0007 2.0908 29 1 1.6350 4.0138 0.4897 30 1 1.7261 3.8656 2.2614 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107398374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:19 Heat of formation + Delta-G solvation = -89.671110 kcal Electronic energy + Delta-G solvation = -11914.578526 eV Core-core repulsion = 9901.159656 eV Total energy + Delta-G solvation = -2013.418870 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.26537 -35.83322 -34.67316 -33.08163 -30.43599 -27.55370 -25.33798 -24.18971 -22.02659 -20.81573 -17.94333 -17.10360 -16.82667 -16.50175 -15.36400 -14.96992 -14.52340 -14.40931 -13.97844 -13.75093 -13.17597 -12.79668 -12.67951 -12.47199 -12.22004 -11.96844 -11.83722 -11.70765 -11.24077 -10.97180 -10.84118 -10.49862 -9.89125 -8.09473 -6.22271 1.41085 1.41172 1.48797 2.42048 3.08550 3.17978 4.01824 4.23281 4.40113 4.46192 4.56006 4.61674 4.67957 4.77895 4.85541 4.95791 5.14083 5.17726 5.20922 5.31825 5.38014 5.48069 5.57059 5.61929 5.79222 6.01571 6.34630 6.57903 6.87059 7.44994 8.95361 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.047521 B = 0.013892 C = 0.012587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.077152 B = 2015.073793 C = 2223.959531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.098 3.902 4 H 0.042 0.958 5 C -0.131 4.131 6 C 0.034 3.966 7 H -0.007 1.007 8 C -0.520 4.520 9 H 0.053 0.947 10 C 0.015 3.985 11 N -0.917 5.917 12 Si 0.947 3.053 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.272 1.272 16 C -0.140 4.140 17 C 0.083 3.917 18 O -0.395 6.395 19 H 0.048 0.952 20 H 0.073 0.927 21 H 0.048 0.952 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.261 0.739 27 H 0.073 0.927 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.018 -6.908 0.673 9.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C 0.041 3.959 4 H 0.060 0.940 5 C -0.169 4.169 6 C 0.016 3.984 7 H 0.011 0.989 8 C -0.558 4.558 9 H 0.071 0.929 10 C -0.184 4.184 11 N -0.557 5.557 12 Si 0.773 3.227 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.197 1.197 16 C -0.178 4.178 17 C 0.006 3.994 18 O -0.315 6.315 19 H 0.068 0.932 20 H 0.092 0.908 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.040 -6.834 0.852 9.160 hybrid contribution 0.320 1.105 -0.877 1.447 sum -5.720 -5.728 -0.026 8.095 Atomic orbital electron populations 1.21677 0.94704 1.02114 1.01570 1.21585 0.97151 0.93277 1.02929 1.22078 0.93540 0.93934 0.86359 0.93990 1.22113 0.96612 0.97754 1.00417 1.18738 0.94282 0.91763 0.93661 0.98881 1.21378 1.30089 0.95298 1.09078 0.92878 1.25686 0.95392 0.98767 0.98525 1.69990 1.37328 1.11706 1.36628 0.85771 0.78927 0.77681 0.80291 1.19632 1.21051 1.19743 1.22016 0.95882 1.02829 0.97089 1.22315 0.94612 0.82221 1.00203 1.87689 1.78968 1.25397 1.39477 0.93240 0.90847 0.93245 0.91267 0.89626 0.92978 0.92112 0.93022 0.90868 0.95084 0.94755 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.81 71.98 0.71 -3.07 16 2 C -0.11 -3.35 5.64 30.59 0.17 -3.17 16 3 C 0.10 3.85 2.41 30.62 0.07 3.93 16 4 H 0.04 1.80 6.87 -2.39 -0.02 1.78 16 5 C -0.13 -5.56 4.87 30.68 0.15 -5.41 16 6 C 0.03 1.74 2.62 -11.42 -0.03 1.71 16 7 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 8 C -0.52 -28.24 6.81 25.60 0.17 -28.07 16 9 H 0.05 2.83 6.92 -2.91 -0.02 2.81 16 10 C 0.01 0.81 5.30 84.66 0.45 1.26 16 11 N -0.92 -52.64 11.31 21.45 0.24 -52.40 16 12 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 16 C -0.14 -6.83 5.45 30.68 0.17 -6.67 16 17 C 0.08 3.65 6.62 72.01 0.48 4.12 16 18 O -0.40 -16.51 9.94 -148.98 -1.48 -17.99 16 19 H 0.05 1.40 7.82 -2.39 -0.02 1.38 16 20 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 22 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 23 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.26 14.31 8.31 -92.71 -0.77 13.53 16 27 H 0.07 3.96 6.01 -2.39 -0.01 3.95 16 28 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.03 1.63 7.38 -2.39 -0.02 1.62 16 30 H 0.09 3.43 8.14 -2.38 -0.02 3.41 16 Total: -1.00 -58.61 238.24 4.21 -54.40 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.09 Total: 6.08 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 2.34 Total: -35.36 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.24 Total: -52.40 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.48 Total: -17.99 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -58.61 4.21 -54.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107398374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.272 kcal (2) G-P(sol) polarization free energy of solvation -58.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds