Wall clock time and date at job start Mon Mar 30 2020 01:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47235 * 2 1 4 4 H 1.08998 * 109.48336 * 55.01399 * 3 2 1 5 5 C 1.53090 * 109.48010 * 175.05416 * 3 2 1 6 6 C 1.53179 * 109.16053 * 177.58616 * 5 3 2 7 7 H 1.09002 * 109.54252 * 62.89000 * 6 5 3 8 8 C 1.50703 * 109.61587 * 183.10874 * 6 5 3 9 9 H 1.08003 * 119.99671 * 5.03237 * 8 6 5 10 10 C 1.37878 * 119.99938 * 185.03680 * 8 6 5 11 11 N 1.31505 * 120.00086 * 9.56126 * 10 8 6 12 12 Si 1.86801 * 119.99804 * 189.56447 * 10 8 6 13 13 H 1.48501 * 109.47229 * 94.98718 * 12 10 8 14 14 H 1.48499 * 109.47371 * 214.99073 * 12 10 8 15 15 H 1.48501 * 109.47331 * 334.99147 * 12 10 8 16 16 C 1.53170 * 109.03946 * 303.02056 * 6 5 3 17 17 C 1.53094 * 109.16339 * 56.98099 * 16 6 5 18 18 O 1.42901 * 109.41528 * 302.38945 * 17 16 6 19 19 H 1.08999 * 109.47127 * 300.00397 * 1 2 3 20 20 H 1.09002 * 109.47362 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46404 * 60.00341 * 1 2 3 22 22 H 1.09002 * 109.46404 * 119.99659 * 2 1 3 23 23 H 1.08999 * 109.47127 * 239.99603 * 2 1 3 24 24 H 1.08993 * 109.52145 * 297.49583 * 5 3 2 25 25 H 1.08998 * 109.52120 * 57.68778 * 5 3 2 26 26 H 0.97006 * 120.00002 * 179.97438 * 11 10 8 27 27 H 1.09002 * 109.52215 * 297.07495 * 16 6 5 28 28 H 1.09005 * 109.52598 * 176.88628 * 16 6 5 29 29 H 1.09001 * 109.48013 * 182.40773 * 17 16 6 30 30 H 1.09003 * 109.49065 * 62.38248 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9816 0.8419 5 6 3.5659 1.4445 0.1244 6 6 4.0734 2.8884 0.0630 7 1 3.6800 3.4496 0.9106 8 6 5.5798 2.8976 0.1079 9 1 6.1261 1.9661 0.0916 10 6 6.2604 4.0951 0.1698 11 7 5.6032 5.2148 0.3788 12 14 8.1159 4.1269 -0.0432 13 1 8.4464 4.4187 -1.4613 14 1 8.6962 5.1807 0.8273 15 1 8.6803 2.8063 0.3348 16 6 3.5959 3.5308 -1.2429 17 6 2.0688 3.4482 -1.3145 18 8 1.6621 2.0815 -1.2211 19 1 -0.3633 0.5139 0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3632 0.5138 -0.8901 22 1 1.8932 -0.5138 0.8901 23 1 1.8934 -0.5139 -0.8899 24 1 3.8543 0.9971 1.0755 25 1 3.9989 0.8711 -0.6952 26 1 6.0821 6.0573 0.4228 27 1 4.0295 2.9995 -2.0901 28 1 3.9058 4.5756 -1.2696 29 1 1.7262 3.8655 -2.2614 30 1 1.6349 4.0138 -0.4899 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107398376.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:22 Heat of formation + Delta-G solvation = -77.040932 kcal Electronic energy + Delta-G solvation = -11660.598769 eV Core-core repulsion = 9647.727585 eV Total energy + Delta-G solvation = -2012.871184 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.59499 -33.99522 -33.35441 -31.17707 -28.99059 -26.00335 -23.34799 -22.35389 -20.59028 -19.02231 -16.35551 -15.66300 -14.97084 -14.45844 -13.83487 -13.42248 -13.19536 -12.75694 -12.57675 -12.12030 -11.37004 -11.02831 -10.91795 -10.82843 -10.59500 -10.45021 -10.21429 -10.09813 -9.60287 -9.19806 -8.96565 -8.36058 -8.28402 -6.02260 -4.03762 3.30284 3.37540 3.40744 4.43936 4.50778 5.28776 5.30921 5.45720 5.60433 5.93452 5.99409 6.09638 6.15507 6.22632 6.29331 6.37905 6.41749 6.55658 6.59068 6.78322 7.01578 7.12606 7.35318 7.64896 7.90699 7.97681 8.10372 8.43915 8.99707 9.59546 11.06709 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.072569 B = 0.010662 C = 0.009823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.744896 B = 2625.433705 C = 2849.647161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.090 3.910 4 H 0.047 0.953 5 C -0.136 4.136 6 C 0.045 3.955 7 H 0.031 0.969 8 C -0.514 4.514 9 H 0.055 0.945 10 C 0.063 3.937 11 N -0.890 5.890 12 Si 0.888 3.112 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.138 4.138 17 C 0.061 3.939 18 O -0.391 6.391 19 H 0.049 0.951 20 H 0.046 0.954 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.260 0.740 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 -5.553 -1.002 8.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.032 3.968 4 H 0.065 0.935 5 C -0.174 4.174 6 C 0.026 3.974 7 H 0.049 0.951 8 C -0.552 4.552 9 H 0.073 0.927 10 C -0.139 4.139 11 N -0.528 5.528 12 Si 0.715 3.285 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.176 4.176 17 C -0.016 4.016 18 O -0.311 6.311 19 H 0.068 0.932 20 H 0.065 0.935 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.663 -5.455 -1.119 8.683 hybrid contribution 1.271 0.369 0.065 1.325 sum -5.392 -5.085 -1.053 7.486 Atomic orbital electron populations 1.21718 0.96071 1.00649 1.02021 1.21554 0.95840 0.95762 1.02146 1.22144 0.95562 0.92370 0.86709 0.93501 1.22266 0.93258 1.01127 1.00776 1.18704 0.95567 0.89540 0.93540 0.95076 1.21165 0.91165 0.92359 1.50480 0.92674 1.24973 0.98155 0.95816 0.94934 1.69962 1.35672 0.98187 1.49001 0.86651 0.85999 0.77746 0.78059 1.20708 1.21309 1.19896 1.22174 0.91952 1.03242 1.00259 1.22662 0.97130 0.81905 0.99871 1.87746 1.78919 1.25564 1.38861 0.93235 0.93459 0.92146 0.91182 0.91565 0.92662 0.92612 0.93050 0.93561 0.90272 0.90792 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.81 37.16 0.36 -1.61 16 2 C -0.12 -1.78 5.64 -26.73 -0.15 -1.93 16 3 C 0.09 1.70 2.64 -26.68 -0.07 1.63 16 4 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.14 -2.94 4.65 -26.59 -0.12 -3.06 16 6 C 0.04 1.14 2.05 -91.59 -0.19 0.95 16 7 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 8 C -0.51 -14.32 8.49 -34.44 -0.29 -14.61 16 9 H 0.05 1.53 7.77 -52.48 -0.41 1.12 16 10 C 0.06 1.76 5.23 -17.82 -0.09 1.66 16 11 N -0.89 -25.72 12.19 55.43 0.68 -25.04 16 12 Si 0.89 21.45 29.55 -169.99 -5.02 16.43 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 C -0.14 -3.29 5.22 -26.59 -0.14 -3.43 16 17 C 0.06 1.23 6.84 37.21 0.25 1.49 16 18 O -0.39 -7.90 9.94 -35.23 -0.35 -8.25 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.06 0.86 7.82 -51.93 -0.41 0.45 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 2.05 7.00 -51.93 -0.36 1.69 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 243.99 15.07 3.68 3.68 Total: -1.00 -28.74 243.99 -6.42 -35.16 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.96 Total: -3.05 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -0.44 Total: -18.92 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.68 Total: -25.04 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.35 Total: -8.25 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.74 -6.42 -35.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107398376.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.883 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds