Wall clock time and date at job start Mon Mar 30 2020 01:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47235 * 2 1 4 4 H 1.08998 * 109.48336 * 55.01399 * 3 2 1 5 5 C 1.53090 * 109.48010 * 175.05416 * 3 2 1 6 6 C 1.53179 * 109.16053 * 177.58616 * 5 3 2 7 7 H 1.09002 * 109.54252 * 62.89000 * 6 5 3 8 8 C 1.50703 * 109.61587 * 183.10874 * 6 5 3 9 9 H 1.08003 * 119.99671 * 5.03237 * 8 6 5 10 10 C 1.37878 * 119.99938 * 185.03680 * 8 6 5 11 11 N 1.31505 * 120.00086 * 9.56126 * 10 8 6 12 12 Si 1.86801 * 119.99804 * 189.56447 * 10 8 6 13 13 H 1.48501 * 109.47229 * 94.98718 * 12 10 8 14 14 H 1.48499 * 109.47371 * 214.99073 * 12 10 8 15 15 H 1.48501 * 109.47331 * 334.99147 * 12 10 8 16 16 C 1.53170 * 109.03946 * 303.02056 * 6 5 3 17 17 C 1.53094 * 109.16339 * 56.98099 * 16 6 5 18 18 O 1.42901 * 109.41528 * 302.38945 * 17 16 6 19 19 H 1.08999 * 109.47127 * 300.00397 * 1 2 3 20 20 H 1.09002 * 109.47362 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46404 * 60.00341 * 1 2 3 22 22 H 1.09002 * 109.46404 * 119.99659 * 2 1 3 23 23 H 1.08999 * 109.47127 * 239.99603 * 2 1 3 24 24 H 1.08993 * 109.52145 * 297.49583 * 5 3 2 25 25 H 1.08998 * 109.52120 * 57.68778 * 5 3 2 26 26 H 0.97006 * 120.00002 * 179.97438 * 11 10 8 27 27 H 1.09002 * 109.52215 * 297.07495 * 16 6 5 28 28 H 1.09005 * 109.52598 * 176.88628 * 16 6 5 29 29 H 1.09001 * 109.48013 * 182.40773 * 17 16 6 30 30 H 1.09003 * 109.49065 * 62.38248 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9816 0.8419 5 6 3.5659 1.4445 0.1244 6 6 4.0734 2.8884 0.0630 7 1 3.6800 3.4496 0.9106 8 6 5.5798 2.8976 0.1079 9 1 6.1261 1.9661 0.0916 10 6 6.2604 4.0951 0.1698 11 7 5.6032 5.2148 0.3788 12 14 8.1159 4.1269 -0.0432 13 1 8.4464 4.4187 -1.4613 14 1 8.6962 5.1807 0.8273 15 1 8.6803 2.8063 0.3348 16 6 3.5959 3.5308 -1.2429 17 6 2.0688 3.4482 -1.3145 18 8 1.6621 2.0815 -1.2211 19 1 -0.3633 0.5139 0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3632 0.5138 -0.8901 22 1 1.8932 -0.5138 0.8901 23 1 1.8934 -0.5139 -0.8899 24 1 3.8543 0.9971 1.0755 25 1 3.9989 0.8711 -0.6952 26 1 6.0821 6.0573 0.4228 27 1 4.0295 2.9995 -2.0901 28 1 3.9058 4.5756 -1.2696 29 1 1.7262 3.8655 -2.2614 30 1 1.6349 4.0138 -0.4899 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107398376.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:22 Heat of formation + Delta-G solvation = -93.969523 kcal Electronic energy + Delta-G solvation = -11661.332848 eV Core-core repulsion = 9647.727585 eV Total energy + Delta-G solvation = -2013.605263 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.25349 -35.91583 -34.75335 -33.19058 -30.53052 -27.93914 -24.94984 -24.13611 -22.02383 -20.87829 -18.43853 -17.20595 -16.80131 -16.31549 -15.41879 -15.12908 -14.58895 -14.42451 -14.23953 -13.79055 -12.93198 -12.82615 -12.65593 -12.50480 -12.25214 -12.05657 -11.90386 -11.72646 -11.51114 -10.97246 -10.83446 -10.46863 -10.10643 -8.16123 -6.25361 1.38368 1.39995 1.50075 2.40799 2.97549 3.13169 3.95531 4.16446 4.31715 4.32655 4.50206 4.52240 4.61034 4.70417 4.81329 4.87797 5.03396 5.14389 5.19633 5.21658 5.29776 5.42819 5.52360 5.58546 5.90480 5.91582 6.32801 6.44031 6.85222 7.41462 8.92035 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.072569 B = 0.010662 C = 0.009823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.744896 B = 2625.433705 C = 2849.647161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C 0.089 3.911 4 H 0.046 0.954 5 C -0.129 4.129 6 C 0.038 3.962 7 H -0.001 1.001 8 C -0.537 4.537 9 H 0.051 0.949 10 C 0.014 3.986 11 N -0.918 5.918 12 Si 0.952 3.048 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.268 1.268 16 C -0.131 4.131 17 C 0.068 3.932 18 O -0.391 6.391 19 H 0.053 0.947 20 H 0.071 0.929 21 H 0.049 0.951 22 H 0.087 0.913 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.262 0.738 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.943 -6.605 -1.238 9.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C 0.031 3.969 4 H 0.064 0.936 5 C -0.167 4.167 6 C 0.020 3.980 7 H 0.017 0.983 8 C -0.574 4.574 9 H 0.069 0.931 10 C -0.185 4.185 11 N -0.557 5.557 12 Si 0.777 3.223 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.192 1.192 16 C -0.170 4.170 17 C -0.009 4.009 18 O -0.311 6.311 19 H 0.072 0.928 20 H 0.090 0.910 21 H 0.069 0.931 22 H 0.105 0.895 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.021 -6.520 -1.356 9.677 hybrid contribution 1.385 0.701 0.169 1.562 sum -5.635 -5.819 -1.187 8.187 Atomic orbital electron populations 1.21683 0.94333 1.02236 1.01776 1.21563 0.97327 0.92953 1.03036 1.22268 0.93586 0.94720 0.86306 0.93584 1.22162 0.95398 0.98325 1.00841 1.18702 0.94562 0.91756 0.93005 0.98275 1.21526 0.92775 0.92398 1.50745 0.93072 1.25749 1.02710 0.95462 0.94555 1.70073 1.37405 0.98664 1.49557 0.85638 0.80537 0.77958 0.78130 1.20134 1.20789 1.19229 1.22014 0.94747 1.01158 0.99042 1.22590 0.94334 0.82475 1.01458 1.87763 1.78566 1.25256 1.39511 0.92761 0.90990 0.93134 0.89476 0.91529 0.92190 0.93033 0.92922 0.94330 0.92910 0.88057 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.81 71.98 0.71 -2.70 16 2 C -0.11 -3.14 5.64 30.60 0.17 -2.96 16 3 C 0.09 3.23 2.64 30.62 0.08 3.31 16 4 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 5 C -0.13 -5.53 4.65 30.68 0.14 -5.38 16 6 C 0.04 1.97 2.05 -11.42 -0.02 1.95 16 7 H 0.00 -0.05 8.09 -2.39 -0.02 -0.07 16 8 C -0.54 -30.31 8.49 25.60 0.22 -30.10 16 9 H 0.05 2.85 7.77 -2.91 -0.02 2.83 16 10 C 0.01 0.80 5.23 84.66 0.44 1.24 16 11 N -0.92 -53.91 12.19 21.45 0.26 -53.65 16 12 Si 0.95 44.12 29.55 68.60 2.03 46.15 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 16 C -0.13 -6.32 5.22 30.68 0.16 -6.16 16 17 C 0.07 2.69 6.84 72.01 0.49 3.19 16 18 O -0.39 -15.17 9.94 -148.98 -1.48 -16.65 16 19 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 20 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.05 1.30 7.82 -2.39 -0.02 1.28 16 22 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 27 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 28 H 0.05 2.79 7.00 -2.38 -0.02 2.78 16 29 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -60.93 243.99 4.28 -56.65 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.08 Total: 5.12 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 2.39 Total: -37.62 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.26 Total: -53.65 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -1.48 Total: -16.65 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -60.93 4.28 -56.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107398376.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.321 kcal (2) G-P(sol) polarization free energy of solvation -60.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds