Wall clock time and date at job start Mon Mar 30 2020 01:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.48089 * 2 1 4 4 C 1.53090 * 109.48304 * 239.95940 * 2 1 3 5 5 C 1.53176 * 109.16668 * 182.40914 * 4 2 1 6 6 H 1.09005 * 109.54225 * 297.11519 * 5 4 2 7 7 C 1.52994 * 109.54603 * 176.84804 * 5 4 2 8 8 C 1.50704 * 109.47267 * 175.44271 * 7 5 4 9 9 H 1.08002 * 119.99393 * 0.02562 * 8 7 5 10 10 C 1.37874 * 120.00298 * 179.97438 * 8 7 5 11 11 N 1.31520 * 119.99685 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00176 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47032 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46935 * 120.00210 * 12 10 8 15 15 H 1.48501 * 109.47159 * 240.00253 * 12 10 8 16 16 C 1.53181 * 109.03564 * 56.97896 * 5 4 2 17 17 C 1.53096 * 109.16280 * 303.02405 * 16 5 4 18 18 O 1.42902 * 109.47734 * 120.01994 * 2 1 3 19 19 H 1.08997 * 109.47579 * 299.98221 * 1 2 3 20 20 H 1.09002 * 109.47002 * 59.98634 * 1 2 3 21 21 H 1.09006 * 109.47335 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.52564 * 302.31806 * 4 2 1 23 23 H 1.08998 * 109.52249 * 62.43969 * 4 2 1 24 24 H 1.08995 * 109.47540 * 295.44470 * 7 5 4 25 25 H 1.09002 * 109.47335 * 55.44581 * 7 5 4 26 26 H 0.97002 * 119.99412 * 179.97438 * 11 10 8 27 27 H 1.08998 * 109.52547 * 183.11606 * 16 5 4 28 28 H 1.09004 * 109.52249 * 62.92485 * 16 5 4 29 29 H 1.08996 * 109.47593 * 177.59033 * 17 16 5 30 30 H 1.09001 * 109.48107 * 297.61277 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2494 5 6 3.5711 -0.7711 -1.2120 6 1 3.9690 0.2433 -1.2408 7 6 4.0878 -1.5599 -2.4168 8 6 5.5939 -1.5121 -2.4402 9 1 6.1290 -0.9734 -1.6721 10 6 6.2887 -2.1570 -3.4413 11 7 5.6370 -2.8135 -4.3763 12 14 8.1555 -2.0984 -3.4699 13 1 8.6434 -1.3018 -2.3155 14 1 8.6955 -3.4789 -3.3817 15 1 8.6117 -1.4683 -4.7349 16 6 4.0177 -1.4601 0.0812 17 6 3.4307 -0.7091 1.2793 18 8 2.0065 -0.6740 1.1665 19 1 -0.3634 0.5135 0.8901 20 1 -0.3633 0.5141 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6443 -1.7378 -1.2706 23 1 1.7140 -0.1854 -2.1398 24 1 3.7583 -2.5961 -2.3412 25 1 3.6961 -1.1202 -3.3341 26 1 6.1258 -3.2669 -5.0808 27 1 5.1059 -1.4498 0.1425 28 1 3.6613 -2.4902 0.0870 29 1 3.7099 -1.2199 2.2007 30 1 3.8193 0.3092 1.2959 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107398386.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:00 Heat of formation + Delta-G solvation = -97.347542 kcal Electronic energy + Delta-G solvation = -11506.363314 eV Core-core repulsion = 9492.611569 eV Total energy + Delta-G solvation = -2013.751745 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.39994 -36.33228 -34.25423 -33.58968 -30.00591 -28.36170 -25.47347 -24.00894 -22.09756 -20.82725 -18.50577 -17.15469 -16.79171 -16.41560 -15.77259 -15.16097 -15.03632 -14.17901 -13.79087 -13.35582 -13.25460 -13.05305 -12.78912 -12.56758 -12.52278 -12.06365 -11.97843 -11.76828 -11.42167 -11.05151 -10.91294 -10.56435 -10.19359 -8.19772 -6.29988 1.38845 1.39077 1.52159 2.40161 2.92245 3.13309 3.88467 3.98068 4.10198 4.20050 4.32768 4.45641 4.59178 4.70979 4.80457 4.86995 4.92740 5.08394 5.13369 5.26614 5.32328 5.36888 5.38316 5.51331 5.75748 5.84857 6.25353 6.36894 6.86140 7.38768 8.92420 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.071505 B = 0.009701 C = 0.008869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.486553 B = 2885.574233 C = 3156.315600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.085 3.915 3 H 0.063 0.937 4 C -0.140 4.140 5 C -0.080 4.080 6 H 0.057 0.943 7 C 0.034 3.966 8 C -0.531 4.531 9 H 0.063 0.937 10 C -0.004 4.004 11 N -0.936 5.936 12 Si 0.964 3.036 13 H -0.260 1.260 14 H -0.280 1.280 15 H -0.279 1.279 16 C -0.136 4.136 17 C 0.066 3.934 18 O -0.398 6.398 19 H 0.072 0.928 20 H 0.085 0.915 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.070 0.930 24 H -0.014 1.014 25 H -0.012 1.012 26 H 0.262 0.738 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.108 0.892 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 5.748 9.108 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.027 3.973 3 H 0.081 0.919 4 C -0.178 4.178 5 C -0.098 4.098 6 H 0.075 0.925 7 C -0.004 4.004 8 C -0.569 4.569 9 H 0.081 0.919 10 C -0.201 4.201 11 N -0.577 5.577 12 Si 0.788 3.212 13 H -0.184 1.184 14 H -0.206 1.206 15 H -0.205 1.205 16 C -0.173 4.173 17 C -0.010 4.010 18 O -0.317 6.317 19 H 0.091 0.909 20 H 0.104 0.896 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.004 0.996 25 H 0.006 0.994 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.860 5.572 9.102 12.175 hybrid contribution 1.198 -0.321 -0.844 1.500 sum -4.662 5.251 8.258 10.840 Atomic orbital electron populations 1.21762 0.91534 1.02874 1.03382 1.22220 0.96119 0.94769 0.84171 0.91890 1.22268 0.95726 1.00944 0.98833 1.21139 0.94401 0.98786 0.95524 0.92475 1.19010 0.95066 0.93674 0.92602 1.21684 0.93023 1.31898 1.10274 0.91912 1.26000 1.03819 0.95042 0.95272 1.70120 1.37463 1.35248 1.14835 0.85418 0.79430 0.77980 0.78352 1.18395 1.20552 1.20485 1.22074 1.01110 0.99226 0.94933 1.22662 0.80246 0.99918 0.98180 1.87830 1.21879 1.78572 1.43462 0.90919 0.89643 0.92464 0.92883 0.91114 0.99600 0.99398 0.92908 0.91404 0.93397 0.87371 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.56 71.98 0.69 -2.50 16 2 C 0.08 2.48 3.26 30.62 0.10 2.58 16 3 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.14 -4.97 4.70 30.68 0.14 -4.83 16 5 C -0.08 -3.35 2.23 -10.68 -0.02 -3.38 16 6 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 7 C 0.03 1.80 4.46 29.85 0.13 1.94 16 8 C -0.53 -30.23 8.45 25.60 0.22 -30.02 16 9 H 0.06 3.41 7.06 -2.91 -0.02 3.39 16 10 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 11 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 12 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 13 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 C -0.14 -5.17 5.18 30.69 0.16 -5.01 16 17 C 0.07 2.00 6.84 72.01 0.49 2.49 16 18 O -0.40 -12.73 10.41 -148.98 -1.55 -14.28 16 19 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 20 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 23 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 24 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 25 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.07 2.69 7.06 -2.39 -0.02 2.67 16 28 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -64.53 244.83 4.21 -60.31 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.08 Total: 3.40 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 2.37 Total: -38.50 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.28 Total: -57.52 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -1.55 Total: -14.28 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.53 4.21 -60.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107398386.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.033 kcal (2) G-P(sol) polarization free energy of solvation -64.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds