Wall clock time and date at job start Mon Mar 30 2020 02:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.87086 * 2 1 4 4 C 1.54322 * 109.87776 * 238.98808 * 2 1 3 5 5 C 1.55164 * 103.09890 * 218.14172 * 4 2 1 6 6 H 1.09001 * 111.00266 * 277.51565 * 5 4 2 7 7 C 1.53006 * 111.00296 * 153.66652 * 5 4 2 8 8 N 1.46901 * 109.47082 * 175.00156 * 7 5 4 9 9 C 1.55387 * 101.36291 * 35.49953 * 5 4 2 10 10 N 1.47020 * 110.01294 * 121.09990 * 2 1 3 11 11 C 1.36928 * 125.65043 * 298.39886 * 10 2 1 12 12 H 1.08001 * 120.00198 * 341.49268 * 11 10 2 13 13 C 1.38812 * 120.00370 * 161.49859 * 11 10 2 14 14 N 1.31613 * 120.00334 * 157.62034 * 13 11 10 15 15 Si 1.86802 * 119.99670 * 337.61851 * 13 11 10 16 16 H 1.48493 * 109.47064 * 84.54100 * 15 13 11 17 17 H 1.48507 * 109.46894 * 204.54153 * 15 13 11 18 18 H 1.48499 * 109.47042 * 324.54124 * 15 13 11 19 19 H 1.09007 * 109.46947 * 181.01718 * 1 2 3 20 20 H 1.08997 * 109.47114 * 301.00825 * 1 2 3 21 21 H 1.08995 * 109.47271 * 61.01700 * 1 2 3 22 22 H 1.08992 * 110.72503 * 336.59440 * 4 2 1 23 23 H 1.09004 * 110.72138 * 99.69392 * 4 2 1 24 24 H 1.08998 * 109.46887 * 295.00040 * 7 5 4 25 25 H 1.09000 * 109.46787 * 55.00404 * 7 5 4 26 26 H 1.00896 * 111.00101 * 179.97438 * 8 7 5 27 27 H 1.00900 * 110.99938 * 303.95807 * 8 7 5 28 28 H 1.09008 * 110.33778 * 204.16752 * 9 5 4 29 29 H 1.08997 * 110.35376 * 81.87190 * 9 5 4 30 30 H 0.96998 * 120.00262 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2438 5 6 3.2921 -1.5098 -0.7000 6 1 4.1678 -0.8615 -0.6693 7 6 3.5708 -2.7654 -1.5289 8 7 4.8136 -3.3943 -1.0622 9 6 2.8196 -1.8770 0.7340 10 7 2.0332 -0.7135 1.1829 11 6 1.8091 -0.3563 2.4856 12 1 1.4884 0.6473 2.7229 13 6 1.9941 -1.2841 3.5014 14 7 2.2159 -0.8762 4.7329 15 14 1.9284 -3.1117 3.1204 16 1 3.2592 -3.5661 2.6435 17 1 1.5606 -3.8605 4.3490 18 1 0.9130 -3.3613 2.0660 19 1 -0.3633 -1.0276 0.0182 20 1 -0.3633 0.5294 0.8808 21 1 -0.3633 0.4979 -0.8989 22 1 1.3061 -1.4455 -1.6187 23 1 2.3473 -0.0432 -2.0224 24 1 2.7439 -3.4665 -1.4155 25 1 3.6740 -2.4920 -2.5789 26 1 5.0195 -4.2266 -1.5941 27 1 5.5835 -2.7431 -1.0966 28 1 3.6780 -2.0298 1.3883 29 1 2.1957 -2.7704 0.7105 30 1 2.3448 -1.5245 5.4428 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126942609.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:47 Heat of formation + Delta-G solvation = -7.980879 kcal Electronic energy + Delta-G solvation = -11825.887531 eV Core-core repulsion = 9848.303767 eV Total energy + Delta-G solvation = -1977.583765 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.88028 -35.92642 -34.40001 -31.87687 -31.53704 -26.83211 -26.44484 -24.49183 -21.46237 -20.89989 -18.79307 -17.50593 -16.70919 -16.41643 -15.46580 -15.13415 -14.98501 -14.45399 -14.32953 -13.83367 -13.23871 -13.03589 -12.87855 -12.51085 -12.36090 -12.19495 -11.71734 -11.53309 -11.42929 -11.24226 -10.77312 -9.49868 -9.02006 -8.17244 -5.41016 1.34632 1.35854 1.45293 2.42537 3.05497 3.33561 3.57358 3.91641 3.95827 4.14131 4.39284 4.51635 4.58022 4.69836 4.76519 4.80106 4.92887 4.99936 5.08306 5.13465 5.34600 5.42657 5.59185 5.75300 6.12455 6.30799 6.68979 6.82054 7.58892 8.17092 9.03207 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.033983 B = 0.018721 C = 0.013755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.738985 B = 1495.268617 C = 2035.084653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.139 3.861 3 H 0.038 0.962 4 C -0.107 4.107 5 C -0.092 4.092 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.868 5.868 9 C 0.126 3.874 10 N -0.627 5.627 11 C -0.223 4.223 12 H 0.059 0.941 13 C -0.038 4.038 14 N -0.959 5.959 15 Si 0.945 3.055 16 H -0.274 1.274 17 H -0.309 1.309 18 H -0.275 1.275 19 H 0.039 0.961 20 H 0.029 0.971 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.352 0.648 27 H 0.347 0.653 28 H 0.028 0.972 29 H 0.013 0.987 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 -3.331 -16.600 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.034 3.966 3 H 0.055 0.945 4 C -0.145 4.145 5 C -0.112 4.112 6 H 0.097 0.903 7 C -0.050 4.050 8 N -0.400 5.400 9 C 0.001 3.999 10 N -0.352 5.352 11 C -0.352 4.352 12 H 0.076 0.924 13 C -0.232 4.232 14 N -0.606 5.606 15 Si 0.775 3.225 16 H -0.200 1.200 17 H -0.238 1.238 18 H -0.201 1.201 19 H 0.058 0.942 20 H 0.048 0.952 21 H 0.100 0.900 22 H 0.099 0.901 23 H 0.119 0.881 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.166 0.834 27 H 0.160 0.840 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.555 -3.429 -15.692 16.138 hybrid contribution 0.166 -0.573 -0.085 0.602 sum 1.721 -4.002 -15.778 16.368 Atomic orbital electron populations 1.22104 0.96819 1.00690 1.00979 1.21300 0.93417 0.95296 0.86576 0.94450 1.22636 0.96549 0.99272 0.96044 1.22398 0.98270 0.97084 0.93410 0.90336 1.21654 0.92877 0.94230 0.96265 1.58559 1.06077 1.11685 1.63700 1.21937 0.92993 0.89318 0.95640 1.45110 1.58401 1.30249 1.01464 1.18555 1.39762 0.95419 0.81457 0.92364 1.25566 1.01398 1.01492 0.94791 1.69960 1.54005 1.34966 1.01708 0.85948 0.78688 0.82688 0.75156 1.20010 1.23816 1.20059 0.94194 0.95177 0.90028 0.90103 0.88054 0.91820 0.92344 0.83401 0.83959 0.95386 0.96897 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.14 71.98 0.66 -4.62 16 2 C 0.14 5.40 3.72 45.34 0.17 5.56 16 3 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.11 -3.04 5.93 31.78 0.19 -2.85 16 5 C -0.09 -2.92 3.21 -9.23 -0.03 -2.95 16 6 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 7 C 0.08 2.00 6.25 86.30 0.54 2.54 16 8 N -0.87 -21.10 9.58 -186.71 -1.79 -22.89 16 9 C 0.13 5.63 4.14 87.02 0.36 5.99 16 10 N -0.63 -31.25 2.94 -667.30 -1.96 -33.21 16 11 C -0.22 -13.40 10.19 84.03 0.86 -12.54 16 12 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 13 C -0.04 -2.39 5.43 84.86 0.46 -1.93 16 14 N -0.96 -63.18 13.97 21.65 0.30 -62.88 16 15 Si 0.95 50.55 24.27 68.60 1.66 52.21 16 16 H -0.27 -14.25 6.49 99.48 0.65 -13.61 16 17 H -0.31 -16.55 7.11 99.48 0.71 -15.84 16 18 H -0.27 -14.28 6.66 99.48 0.66 -13.61 16 19 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 20 H 0.03 1.20 8.05 -2.39 -0.02 1.18 16 21 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.08 2.10 7.75 -2.39 -0.02 2.08 16 23 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 24 H 0.06 1.68 7.97 -2.39 -0.02 1.66 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.35 6.56 9.08 -89.70 -0.81 5.74 16 27 H 0.35 7.49 8.99 -89.69 -0.81 6.69 16 28 H 0.03 1.41 6.64 -2.38 -0.02 1.40 16 29 H 0.01 0.63 5.36 -2.39 -0.01 0.62 16 30 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 Total: -1.00 -71.97 238.10 0.82 -71.15 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -0.60 Total: 6.41 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 3.20 Total: -10.79 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -3.45 Total: -118.98 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 1.66 Total: 52.21 kcal Total: -71.97 0.82 -71.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126942609.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.171 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds