Wall clock time and date at job start Mon Mar 30 2020 02:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87752 * 2 1 4 4 C 1.54322 * 110.01331 * 238.89986 * 2 1 3 5 5 C 1.55153 * 102.94255 * 262.70646 * 4 2 1 6 6 H 1.09003 * 111.00449 * 82.60873 * 5 4 2 7 7 C 1.53005 * 111.00548 * 206.41904 * 5 4 2 8 8 N 1.46894 * 109.47170 * 184.99982 * 7 5 4 9 9 C 1.55128 * 101.48631 * 324.33290 * 5 4 2 10 10 N 1.47024 * 109.88121 * 121.01748 * 2 1 3 11 11 C 1.36941 * 125.64570 * 300.59137 * 10 2 1 12 12 H 1.08003 * 120.00162 * 19.62189 * 11 10 2 13 13 C 1.38806 * 119.99814 * 199.62063 * 11 10 2 14 14 N 1.31618 * 120.00446 * 28.51199 * 13 11 10 15 15 Si 1.86809 * 119.99706 * 208.51405 * 13 11 10 16 16 H 1.48503 * 109.46986 * 179.97438 * 15 13 11 17 17 H 1.48499 * 109.47094 * 60.00152 * 15 13 11 18 18 H 1.48493 * 109.47207 * 299.99807 * 15 13 11 19 19 H 1.09000 * 109.47169 * 300.44350 * 1 2 3 20 20 H 1.09007 * 109.46801 * 60.43572 * 1 2 3 21 21 H 1.08992 * 109.47305 * 180.43633 * 1 2 3 22 22 H 1.09008 * 110.71841 * 21.06620 * 4 2 1 23 23 H 1.08996 * 110.72410 * 144.34319 * 4 2 1 24 24 H 1.08999 * 109.47021 * 305.00446 * 7 5 4 25 25 H 1.09004 * 109.46520 * 65.00088 * 7 5 4 26 26 H 1.00900 * 110.99982 * 56.04780 * 8 7 5 27 27 H 1.00903 * 110.99858 * 180.02562 * 8 7 5 28 28 H 1.09003 * 110.49145 * 278.45276 * 9 5 4 29 29 H 1.08995 * 110.34432 * 156.06450 * 9 5 4 30 30 H 0.96995 * 119.99856 * 5.64390 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2416 5 6 2.3574 -2.1680 -0.6902 6 1 1.4521 -2.7743 -0.6597 7 6 3.4480 -2.8573 -1.5127 8 7 3.6203 -4.2370 -1.0390 9 6 2.8642 -1.8433 0.7396 10 7 2.0300 -0.7125 1.1849 11 6 1.7688 -0.3775 2.4868 12 1 0.9223 0.2502 2.7235 13 6 2.5919 -0.8446 3.5021 14 7 3.8591 -1.1018 3.2563 15 14 1.9011 -1.1083 5.2176 16 1 2.9755 -1.6088 6.1124 17 1 0.8012 -2.1044 5.1606 18 1 1.3774 0.1778 5.7435 19 1 -0.3633 0.5207 0.8860 20 1 -0.3633 0.5071 -0.8939 21 1 -0.3633 -1.0275 0.0078 22 1 1.2961 -0.7905 -2.0200 23 1 2.9684 -0.2809 -1.6161 24 1 3.1589 -2.8673 -2.5636 25 1 4.3864 -2.3143 -1.3992 26 1 2.7479 -4.7427 -1.0735 27 1 4.3361 -4.7138 -1.5666 28 1 3.9147 -1.5534 0.7154 29 1 2.7217 -2.7016 1.3961 30 1 4.2379 -0.8883 2.3893 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126943065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:53 Heat of formation + Delta-G solvation = 10.277327 kcal Electronic energy + Delta-G solvation = -11775.897682 eV Core-core repulsion = 9799.105653 eV Total energy + Delta-G solvation = -1976.792029 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.15721 -34.47284 -32.56212 -29.95925 -28.90275 -25.00085 -24.82706 -22.48190 -19.64424 -19.29592 -17.15913 -15.59818 -14.96465 -14.21708 -14.09051 -13.66812 -13.22259 -12.81385 -12.13799 -11.79309 -11.67375 -11.39121 -11.07283 -10.59812 -10.28830 -10.00831 -9.98030 -9.88202 -9.75308 -9.36706 -8.37086 -8.25237 -6.78129 -5.96878 -3.01169 3.56571 3.61715 3.79169 4.68912 4.77595 5.19279 5.36671 5.49493 5.53221 5.61453 5.88301 5.98704 5.99267 6.18628 6.25584 6.33152 6.51135 6.54078 6.71199 6.88839 7.12382 7.25857 7.29875 7.39406 7.66164 7.98377 8.64283 9.18008 9.96663 10.55380 11.35491 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.039293 B = 0.014659 C = 0.011706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.429255 B = 1909.568509 C = 2391.459511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.152 3.848 3 H 0.029 0.971 4 C -0.120 4.120 5 C -0.106 4.106 6 H 0.069 0.931 7 C 0.077 3.923 8 N -0.846 5.846 9 C 0.165 3.835 10 N -0.600 5.600 11 C -0.335 4.335 12 H 0.061 0.939 13 C -0.026 4.026 14 N -0.914 5.914 15 Si 1.062 2.938 16 H -0.286 1.286 17 H -0.295 1.295 18 H -0.294 1.294 19 H 0.050 0.950 20 H 0.036 0.964 21 H 0.047 0.953 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.018 0.982 25 H 0.070 0.930 26 H 0.337 0.663 27 H 0.335 0.665 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 -2.627 -9.453 10.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.045 3.955 3 H 0.047 0.953 4 C -0.159 4.159 5 C -0.126 4.126 6 H 0.087 0.913 7 C -0.054 4.054 8 N -0.374 5.374 9 C 0.040 3.960 10 N -0.326 5.326 11 C -0.463 4.463 12 H 0.079 0.921 13 C -0.228 4.228 14 N -0.554 5.554 15 Si 0.892 3.108 16 H -0.212 1.212 17 H -0.222 1.222 18 H -0.222 1.222 19 H 0.069 0.931 20 H 0.055 0.945 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.460 -2.805 -7.111 8.031 hybrid contribution -0.732 0.391 -2.523 2.656 sum -3.193 -2.414 -9.634 10.432 Atomic orbital electron populations 1.22149 0.98351 1.00751 0.99686 1.20874 0.92623 0.94701 0.87258 0.95294 1.22610 1.00062 0.95907 0.97317 1.22447 0.97309 0.94965 0.97872 0.91290 1.21738 0.99356 0.89565 0.94791 1.58593 1.12467 1.03625 1.62759 1.21433 0.93484 0.90608 0.90497 1.44647 1.58757 1.28281 1.00870 1.19660 1.10129 1.34765 0.81744 0.92134 1.25708 0.93938 1.00302 1.02841 1.70755 1.10709 1.48773 1.25156 0.83563 0.75161 0.76176 0.75861 1.21150 1.22231 1.22165 0.93058 0.94475 0.93421 0.92122 0.92059 0.96420 0.91134 0.85065 0.85340 0.95796 0.93251 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.10 37.16 0.34 -2.59 16 2 C 0.15 3.33 3.74 -66.95 -0.25 3.08 16 3 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -2.16 5.96 -24.90 -0.15 -2.31 16 5 C -0.11 -1.99 3.21 -88.35 -0.28 -2.28 16 6 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 7 C 0.08 1.20 6.24 -3.82 -0.02 1.17 16 8 N -0.85 -12.41 9.57 -10.37 -0.10 -12.51 16 9 C 0.17 4.05 4.80 -2.42 -0.01 4.04 16 10 N -0.60 -15.85 3.01 -162.45 -0.49 -16.34 16 11 C -0.34 -9.82 9.61 -15.06 -0.14 -9.97 16 12 H 0.06 1.77 7.50 -52.48 -0.39 1.38 16 13 C -0.03 -0.77 5.09 -17.43 -0.09 -0.85 16 14 N -0.91 -28.76 13.01 55.49 0.72 -28.04 16 15 Si 1.06 26.39 30.00 -169.99 -5.10 21.29 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H 0.05 1.06 7.59 -51.93 -0.39 0.67 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.94 7.83 -51.92 -0.41 0.53 16 23 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 24 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.07 1.16 7.96 -51.93 -0.41 0.75 16 26 H 0.34 4.48 8.99 -39.29 -0.35 4.13 16 27 H 0.33 3.99 9.08 -39.29 -0.36 3.63 16 28 H 0.02 0.64 6.58 -51.93 -0.34 0.30 16 29 H 0.05 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.27 8.54 6.19 -40.82 -0.25 8.29 16 LS Contribution 243.22 15.07 3.67 3.67 Total: -1.00 -32.24 243.22 -6.57 -38.81 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.66 Total: 2.82 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.61 Total: -9.70 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.13 Total: -56.89 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -5.10 Total: 21.29 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.24 -6.57 -38.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126943065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.090 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds