Wall clock time and date at job start Mon Mar 30 2020 02:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87752 * 2 1 4 4 C 1.54322 * 110.01331 * 238.89986 * 2 1 3 5 5 C 1.55153 * 102.94255 * 262.70646 * 4 2 1 6 6 H 1.09003 * 111.00449 * 82.60873 * 5 4 2 7 7 C 1.53005 * 111.00548 * 206.41904 * 5 4 2 8 8 N 1.46894 * 109.47170 * 184.99982 * 7 5 4 9 9 C 1.55128 * 101.48631 * 324.33290 * 5 4 2 10 10 N 1.47024 * 109.88121 * 121.01748 * 2 1 3 11 11 C 1.36941 * 125.64570 * 300.59137 * 10 2 1 12 12 H 1.08003 * 120.00162 * 19.62189 * 11 10 2 13 13 C 1.38806 * 119.99814 * 199.62063 * 11 10 2 14 14 N 1.31618 * 120.00446 * 28.51199 * 13 11 10 15 15 Si 1.86809 * 119.99706 * 208.51405 * 13 11 10 16 16 H 1.48503 * 109.46986 * 179.97438 * 15 13 11 17 17 H 1.48499 * 109.47094 * 60.00152 * 15 13 11 18 18 H 1.48493 * 109.47207 * 299.99807 * 15 13 11 19 19 H 1.09000 * 109.47169 * 300.44350 * 1 2 3 20 20 H 1.09007 * 109.46801 * 60.43572 * 1 2 3 21 21 H 1.08992 * 109.47305 * 180.43633 * 1 2 3 22 22 H 1.09008 * 110.71841 * 21.06620 * 4 2 1 23 23 H 1.08996 * 110.72410 * 144.34319 * 4 2 1 24 24 H 1.08999 * 109.47021 * 305.00446 * 7 5 4 25 25 H 1.09004 * 109.46520 * 65.00088 * 7 5 4 26 26 H 1.00900 * 110.99982 * 56.04780 * 8 7 5 27 27 H 1.00903 * 110.99858 * 180.02562 * 8 7 5 28 28 H 1.09003 * 110.49145 * 278.45276 * 9 5 4 29 29 H 1.08995 * 110.34432 * 156.06450 * 9 5 4 30 30 H 0.96995 * 119.99856 * 5.64390 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2416 5 6 2.3574 -2.1680 -0.6902 6 1 1.4521 -2.7743 -0.6597 7 6 3.4480 -2.8573 -1.5127 8 7 3.6203 -4.2370 -1.0390 9 6 2.8642 -1.8433 0.7396 10 7 2.0300 -0.7125 1.1849 11 6 1.7688 -0.3775 2.4868 12 1 0.9223 0.2502 2.7235 13 6 2.5919 -0.8446 3.5021 14 7 3.8591 -1.1018 3.2563 15 14 1.9011 -1.1083 5.2176 16 1 2.9755 -1.6088 6.1124 17 1 0.8012 -2.1044 5.1606 18 1 1.3774 0.1778 5.7435 19 1 -0.3633 0.5207 0.8860 20 1 -0.3633 0.5071 -0.8939 21 1 -0.3633 -1.0275 0.0078 22 1 1.2961 -0.7905 -2.0200 23 1 2.9684 -0.2809 -1.6161 24 1 3.1589 -2.8673 -2.5636 25 1 4.3864 -2.3143 -1.3992 26 1 2.7479 -4.7427 -1.0735 27 1 4.3361 -4.7138 -1.5666 28 1 3.9147 -1.5534 0.7154 29 1 2.7217 -2.7016 1.3961 30 1 4.2379 -0.8883 2.3893 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126943065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:53 Heat of formation + Delta-G solvation = -13.471146 kcal Electronic energy + Delta-G solvation = -11776.927493 eV Core-core repulsion = 9799.105653 eV Total energy + Delta-G solvation = -1977.821840 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.87935 -35.97696 -34.53720 -31.52086 -30.88152 -26.87352 -26.45547 -24.22616 -21.38196 -21.01470 -19.24829 -17.06863 -16.49481 -15.96421 -15.68849 -15.45615 -15.03431 -14.38428 -13.89696 -13.55260 -13.31432 -13.00119 -12.64098 -12.47944 -12.16953 -11.88938 -11.75192 -11.60614 -11.41244 -11.33747 -10.46315 -9.50484 -8.95962 -8.29323 -5.30530 1.54911 1.64368 1.82885 2.65470 3.20530 3.47235 3.61334 3.94849 3.95799 4.12967 4.36467 4.50661 4.56556 4.63489 4.75280 4.82044 4.89370 5.01131 5.13198 5.17338 5.32909 5.46217 5.55841 5.75762 6.28871 6.35892 6.67654 6.97513 7.76780 8.37872 9.01650 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.039293 B = 0.014659 C = 0.011706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.429255 B = 1909.568509 C = 2391.459511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.136 3.864 3 H 0.014 0.986 4 C -0.107 4.107 5 C -0.091 4.091 6 H 0.074 0.926 7 C 0.084 3.916 8 N -0.864 5.864 9 C 0.173 3.827 10 N -0.623 5.623 11 C -0.342 4.342 12 H 0.056 0.944 13 C -0.083 4.083 14 N -0.943 5.943 15 Si 1.114 2.886 16 H -0.291 1.291 17 H -0.282 1.282 18 H -0.273 1.273 19 H 0.029 0.971 20 H 0.077 0.923 21 H 0.046 0.954 22 H 0.101 0.899 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.346 0.654 27 H 0.351 0.649 28 H -0.006 1.006 29 H 0.007 0.993 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 -2.887 -11.034 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 H 0.032 0.968 4 C -0.145 4.145 5 C -0.111 4.111 6 H 0.092 0.908 7 C -0.047 4.047 8 N -0.396 5.396 9 C 0.048 3.952 10 N -0.349 5.349 11 C -0.471 4.471 12 H 0.074 0.926 13 C -0.279 4.279 14 N -0.586 5.586 15 Si 0.939 3.061 16 H -0.217 1.217 17 H -0.208 1.208 18 H -0.199 1.199 19 H 0.048 0.952 20 H 0.096 0.904 21 H 0.065 0.935 22 H 0.119 0.881 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.159 0.841 27 H 0.165 0.835 28 H 0.012 0.988 29 H 0.026 0.974 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.802 -3.055 -8.737 10.007 hybrid contribution -0.331 0.512 -2.073 2.161 sum -4.133 -2.543 -10.811 11.850 Atomic orbital electron populations 1.22013 0.96161 1.00923 1.00686 1.21213 0.94274 0.94066 0.87406 0.96815 1.22587 1.01557 0.94159 0.96237 1.22346 0.98309 0.96186 0.94248 0.90752 1.21607 0.97563 0.89536 0.96009 1.58516 1.13677 1.03647 1.63741 1.21259 0.91959 0.88537 0.93493 1.44977 1.58860 1.29637 1.01418 1.19937 1.09437 1.34056 0.83649 0.92604 1.27172 0.93654 1.00303 1.06740 1.70883 1.11956 1.51301 1.24443 0.82873 0.74613 0.77198 0.71445 1.21725 1.20813 1.19882 0.95206 0.90393 0.93509 0.88061 0.91166 0.92658 0.92358 0.84079 0.83463 0.98839 0.97441 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.10 71.98 0.66 -4.45 16 2 C 0.14 5.79 3.74 45.34 0.17 5.96 16 3 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 4 C -0.11 -3.51 5.96 31.78 0.19 -3.32 16 5 C -0.09 -3.26 3.21 -9.32 -0.03 -3.29 16 6 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 7 C 0.08 2.42 6.24 86.31 0.54 2.95 16 8 N -0.86 -23.89 9.57 -186.72 -1.79 -25.67 16 9 C 0.17 8.70 4.80 86.93 0.42 9.12 16 10 N -0.62 -33.45 3.01 -667.86 -2.01 -35.46 16 11 C -0.34 -20.45 9.61 84.03 0.81 -19.64 16 12 H 0.06 3.32 7.50 -2.91 -0.02 3.29 16 13 C -0.08 -5.03 5.09 84.86 0.43 -4.60 16 14 N -0.94 -61.53 13.01 21.65 0.28 -61.25 16 15 Si 1.11 53.96 30.00 68.60 2.06 56.02 16 16 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 H 0.03 1.19 7.59 -2.39 -0.02 1.17 16 20 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 21 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.10 2.57 7.83 -2.38 -0.02 2.55 16 23 H 0.07 2.19 8.04 -2.39 -0.02 2.17 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.83 7.96 -2.38 -0.02 1.81 16 26 H 0.35 8.49 8.99 -89.69 -0.81 7.68 16 27 H 0.35 7.66 9.08 -89.69 -0.81 6.84 16 28 H -0.01 -0.34 6.58 -2.39 -0.02 -0.36 16 29 H 0.01 0.41 8.07 -2.39 -0.02 0.39 16 30 H 0.25 16.84 6.19 -92.71 -0.57 16.27 16 Total: -1.00 -72.15 243.22 1.42 -70.73 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -0.30 Total: 12.91 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 3.18 Total: -17.27 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -3.52 Total: -122.38 kcal Atomic # 14 Polarization: 53.96 SS G_CDS: 2.06 Total: 56.02 kcal Total: -72.15 1.42 -70.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126943065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.258 kcal (2) G-P(sol) polarization free energy of solvation -72.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds