Wall clock time and date at job start Mon Mar 30 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46782 * 2 1 4 4 C 1.50695 * 109.46931 * 119.99897 * 2 1 3 5 5 H 1.08008 * 119.99645 * 120.00434 * 4 2 1 6 6 C 1.37870 * 120.00105 * 299.99834 * 4 2 1 7 7 N 1.31522 * 120.00085 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00177 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46832 * 90.00103 * 8 6 4 10 10 H 1.48495 * 109.47238 * 329.99956 * 8 6 4 11 11 H 1.48497 * 109.47187 * 209.99894 * 8 6 4 12 12 N 1.46896 * 109.46919 * 240.00327 * 2 1 3 13 13 C 1.47440 * 111.00662 * 64.15793 * 12 2 1 14 14 C 1.54314 * 107.23744 * 123.25485 * 13 12 2 15 15 C 1.55142 * 103.01770 * 22.28574 * 14 13 12 16 16 H 1.09000 * 110.99119 * 82.43828 * 15 14 13 17 17 N 1.46897 * 110.98940 * 206.25302 * 15 14 13 18 18 C 1.47848 * 110.99950 * 185.00106 * 12 2 1 19 19 H 1.09005 * 109.47182 * 65.82225 * 1 2 3 20 20 H 1.09002 * 109.47207 * 185.81924 * 1 2 3 21 21 H 1.08996 * 109.47290 * 305.82471 * 1 2 3 22 22 H 0.96999 * 120.00104 * 180.02562 * 7 6 4 23 23 H 1.08997 * 109.88920 * 242.66676 * 13 12 2 24 24 H 1.09003 * 109.88685 * 3.84996 * 13 12 2 25 25 H 1.08996 * 110.70681 * 140.66562 * 14 13 12 26 26 H 1.08996 * 110.70657 * 263.73100 * 14 13 12 27 27 H 1.00900 * 111.00628 * 298.54712 * 17 15 14 28 28 H 1.00909 * 110.99779 * 62.50176 * 17 15 14 29 29 H 1.09004 * 110.36884 * 332.46156 * 18 12 2 30 30 H 1.09000 * 110.37572 * 94.80169 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4826 7 7 2.1380 -0.8590 3.5565 8 14 0.6247 1.2791 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.8470 2.1765 1.4920 11 1 0.9759 1.9951 3.9067 12 7 2.0196 -0.6924 -1.1995 13 6 1.6301 0.0313 -2.4235 14 6 2.9256 0.3455 -3.2008 15 6 3.9232 -0.7121 -2.6593 16 1 3.7969 -1.6661 -3.1710 17 7 5.3082 -0.2357 -2.7729 18 6 3.4926 -0.8172 -1.1750 19 1 -0.3634 0.4209 -0.9376 20 1 -0.3634 -1.0224 0.1042 21 1 -0.3633 0.6015 0.8332 22 1 1.9034 -0.5278 4.4375 23 1 0.9753 -0.5933 -3.0311 24 1 1.1217 0.9588 -2.1600 25 1 2.7727 0.2178 -4.2724 26 1 3.2724 1.3549 -2.9800 27 1 5.5555 -0.0695 -3.7369 28 1 5.4527 0.5923 -2.2146 29 1 3.9325 -0.0067 -0.5939 30 1 3.7848 -1.7829 -0.7626 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130835015.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:28 Heat of formation + Delta-G solvation = 9.370429 kcal Electronic energy + Delta-G solvation = -11750.650595 eV Core-core repulsion = 9773.819240 eV Total energy + Delta-G solvation = -1976.831355 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.69006 -34.66382 -32.41511 -30.59167 -28.66578 -26.36046 -24.85655 -21.65352 -20.24020 -19.27843 -16.92477 -15.94337 -15.50112 -14.52561 -14.27114 -13.12610 -13.01275 -12.98047 -12.75270 -12.31588 -11.84910 -11.74047 -10.95318 -10.74463 -10.66325 -10.50186 -10.19101 -10.10114 -9.48175 -9.05419 -8.56426 -8.50266 -7.36212 -6.06259 -4.04843 3.26420 3.34968 3.37692 4.39619 4.54949 4.90799 5.08348 5.22602 5.28384 5.38524 5.79402 5.82412 6.01243 6.14886 6.30958 6.40030 6.45785 6.54560 6.61678 6.80523 6.83323 7.24204 7.31398 7.56551 7.57754 7.95446 8.04980 8.65231 9.01007 9.55728 11.06747 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053462 B = 0.013124 C = 0.011680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.611439 B = 2133.061342 C = 2396.688146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.178 3.822 3 H -0.004 1.004 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.898 5.898 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.297 1.297 12 N -0.516 5.516 13 C 0.042 3.958 14 C -0.177 4.177 15 C 0.076 3.924 16 H 0.091 0.909 17 N -0.839 5.839 18 C 0.071 3.929 19 H 0.029 0.971 20 H 0.061 0.939 21 H 0.039 0.961 22 H 0.264 0.736 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.336 0.664 28 H 0.340 0.660 29 H 0.049 0.951 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.752 3.971 -11.536 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.070 3.930 3 H 0.014 0.986 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.225 1.225 12 N -0.241 5.241 13 C -0.087 4.087 14 C -0.218 4.218 15 C -0.036 4.036 16 H 0.109 0.891 17 N -0.367 5.367 18 C -0.057 4.057 19 H 0.048 0.952 20 H 0.080 0.920 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.067 0.933 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.733 2.763 -10.990 11.356 hybrid contribution -0.828 2.568 -0.143 2.702 sum -0.095 5.331 -11.133 12.344 Atomic orbital electron populations 1.22170 0.98463 1.01474 0.98049 1.19877 0.91613 0.92375 0.89138 0.98628 1.20994 1.31900 1.13649 0.87934 0.89969 1.24921 0.95801 0.96588 0.95827 1.69886 1.45678 1.40268 0.97852 0.86882 0.80896 0.83855 0.76673 1.20510 1.19641 1.22461 1.63536 1.10184 1.48767 1.01595 1.22752 0.96028 0.97178 0.92776 1.23595 0.98558 0.99549 1.00097 1.22767 0.85668 0.97229 0.97964 0.89103 1.58768 1.23191 1.40119 1.14609 1.22752 0.87901 1.02384 0.92686 0.95188 0.91980 0.94288 0.92633 0.91506 0.93395 0.91702 0.92208 0.85226 0.84711 0.93285 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.61 37.16 0.32 -2.92 16 2 C 0.18 4.31 1.21 -68.87 -0.08 4.22 16 3 H 0.00 -0.09 7.18 -51.93 -0.37 -0.47 16 4 C -0.51 -14.38 8.54 -34.45 -0.29 -14.67 16 5 H 0.08 2.54 7.22 -52.48 -0.38 2.16 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 8 Si 0.89 22.19 24.31 -169.99 -4.13 18.06 16 9 H -0.28 -6.79 6.92 56.52 0.39 -6.40 16 10 H -0.27 -6.55 6.53 56.52 0.37 -6.18 16 11 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 12 N -0.52 -10.93 5.02 -224.69 -1.13 -12.05 16 13 C 0.04 0.72 6.08 -2.84 -0.02 0.70 16 14 C -0.18 -2.54 6.63 -24.91 -0.17 -2.71 16 15 C 0.08 1.17 4.21 -65.58 -0.28 0.90 16 16 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 17 N -0.84 -11.23 9.42 -2.86 -0.03 -11.26 16 18 C 0.07 1.41 5.21 -2.30 -0.01 1.40 16 19 H 0.03 0.58 6.63 -51.93 -0.34 0.23 16 20 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 21 H 0.04 0.90 3.44 -51.93 -0.18 0.72 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.05 0.84 6.66 -51.93 -0.35 0.49 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.34 3.62 9.07 -39.29 -0.36 3.27 16 28 H 0.34 4.45 8.83 -39.29 -0.35 4.10 16 29 H 0.05 1.05 7.54 -51.93 -0.39 0.66 16 30 H 0.08 1.72 7.79 -51.93 -0.40 1.31 16 LS Contribution 232.59 15.07 3.51 3.51 Total: -1.00 -30.16 232.59 -6.05 -36.21 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.41 Total: 3.55 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.63 Total: -11.14 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.38 Total: -50.17 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.13 Total: 18.06 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.16 -6.05 -36.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130835015.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.579 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds