Wall clock time and date at job start Mon Mar 30 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46782 * 2 1 4 4 C 1.50695 * 109.46931 * 119.99897 * 2 1 3 5 5 H 1.08008 * 119.99645 * 120.00434 * 4 2 1 6 6 C 1.37870 * 120.00105 * 299.99834 * 4 2 1 7 7 N 1.31522 * 120.00085 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00177 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46832 * 90.00103 * 8 6 4 10 10 H 1.48495 * 109.47238 * 329.99956 * 8 6 4 11 11 H 1.48497 * 109.47187 * 209.99894 * 8 6 4 12 12 N 1.46896 * 109.46919 * 240.00327 * 2 1 3 13 13 C 1.47440 * 111.00662 * 64.15793 * 12 2 1 14 14 C 1.54314 * 107.23744 * 123.25485 * 13 12 2 15 15 C 1.55142 * 103.01770 * 22.28574 * 14 13 12 16 16 H 1.09000 * 110.99119 * 82.43828 * 15 14 13 17 17 N 1.46897 * 110.98940 * 206.25302 * 15 14 13 18 18 C 1.47848 * 110.99950 * 185.00106 * 12 2 1 19 19 H 1.09005 * 109.47182 * 65.82225 * 1 2 3 20 20 H 1.09002 * 109.47207 * 185.81924 * 1 2 3 21 21 H 1.08996 * 109.47290 * 305.82471 * 1 2 3 22 22 H 0.96999 * 120.00104 * 180.02562 * 7 6 4 23 23 H 1.08997 * 109.88920 * 242.66676 * 13 12 2 24 24 H 1.09003 * 109.88685 * 3.84996 * 13 12 2 25 25 H 1.08996 * 110.70681 * 140.66562 * 14 13 12 26 26 H 1.08996 * 110.70657 * 263.73100 * 14 13 12 27 27 H 1.00900 * 111.00628 * 298.54712 * 17 15 14 28 28 H 1.00909 * 110.99779 * 62.50176 * 17 15 14 29 29 H 1.09004 * 110.36884 * 332.46156 * 18 12 2 30 30 H 1.09000 * 110.37572 * 94.80169 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4826 7 7 2.1380 -0.8590 3.5565 8 14 0.6247 1.2791 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.8470 2.1765 1.4920 11 1 0.9759 1.9951 3.9067 12 7 2.0196 -0.6924 -1.1995 13 6 1.6301 0.0313 -2.4235 14 6 2.9256 0.3455 -3.2008 15 6 3.9232 -0.7121 -2.6593 16 1 3.7969 -1.6661 -3.1710 17 7 5.3082 -0.2357 -2.7729 18 6 3.4926 -0.8172 -1.1750 19 1 -0.3634 0.4209 -0.9376 20 1 -0.3634 -1.0224 0.1042 21 1 -0.3633 0.6015 0.8332 22 1 1.9034 -0.5278 4.4375 23 1 0.9753 -0.5933 -3.0311 24 1 1.1217 0.9588 -2.1600 25 1 2.7727 0.2178 -4.2724 26 1 3.2724 1.3549 -2.9800 27 1 5.5555 -0.0695 -3.7369 28 1 5.4527 0.5923 -2.2146 29 1 3.9325 -0.0067 -0.5939 30 1 3.7848 -1.7829 -0.7626 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130835015.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:28 Heat of formation + Delta-G solvation = -15.810433 kcal Electronic energy + Delta-G solvation = -11751.742519 eV Core-core repulsion = 9773.819240 eV Total energy + Delta-G solvation = -1977.923279 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.18796 -36.30755 -34.30966 -32.26841 -30.15723 -27.91504 -26.80576 -23.29876 -21.60790 -20.95330 -18.92962 -17.45622 -17.14866 -16.15284 -15.81613 -14.92569 -14.58331 -14.40700 -14.35031 -14.18487 -13.47303 -13.18574 -12.70332 -12.55045 -12.27739 -12.06187 -11.98431 -11.60408 -11.41000 -11.11377 -10.75919 -9.59949 -9.03411 -8.30614 -6.34359 1.27928 1.32010 1.42488 2.29229 3.02144 3.16557 3.60562 3.78311 3.98345 4.16278 4.43572 4.48975 4.55483 4.64603 4.72161 4.75798 4.86091 4.97045 5.07379 5.18727 5.29548 5.41395 5.63256 6.01706 6.15646 6.31237 6.60905 6.67324 6.72881 7.30656 8.86231 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053462 B = 0.013124 C = 0.011680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.611439 B = 2133.061342 C = 2396.688146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.182 3.818 3 H -0.011 1.011 4 C -0.511 4.511 5 H 0.037 0.963 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.951 3.049 9 H -0.263 1.263 10 H -0.253 1.253 11 H -0.297 1.297 12 N -0.533 5.533 13 C 0.036 3.964 14 C -0.163 4.163 15 C 0.091 3.909 16 H 0.097 0.903 17 N -0.842 5.842 18 C 0.069 3.931 19 H 0.065 0.935 20 H 0.052 0.948 21 H 0.035 0.965 22 H 0.266 0.734 23 H 0.084 0.916 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.355 0.645 28 H 0.343 0.657 29 H 0.025 0.975 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 5.621 -13.842 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.073 3.927 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.055 0.945 6 C -0.186 4.186 7 N -0.588 5.588 8 Si 0.778 3.222 9 H -0.189 1.189 10 H -0.177 1.177 11 H -0.224 1.224 12 N -0.258 5.258 13 C -0.092 4.092 14 C -0.204 4.204 15 C -0.022 4.022 16 H 0.115 0.885 17 N -0.372 5.372 18 C -0.059 4.059 19 H 0.084 0.916 20 H 0.071 0.929 21 H 0.053 0.947 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.170 0.830 28 H 0.156 0.844 29 H 0.044 0.956 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.245 4.413 -13.343 14.056 hybrid contribution -0.433 1.951 0.549 2.073 sum -0.678 6.364 -12.794 14.305 Atomic orbital electron populations 1.22069 0.96652 1.01195 0.99808 1.19700 0.92929 0.91333 0.88710 0.99366 1.21233 1.31011 1.12412 0.90273 0.94500 1.25802 0.97390 1.00054 0.95306 1.70044 1.47683 1.42519 0.98559 0.85820 0.79393 0.79861 0.77111 1.18924 1.17711 1.22422 1.63413 1.10721 1.49490 1.02126 1.22898 0.97847 0.97178 0.91319 1.23524 0.96127 0.99160 1.01542 1.22536 0.87070 0.98327 0.94251 0.88533 1.58680 1.21881 1.40501 1.16183 1.22645 0.87676 0.99734 0.95855 0.91604 0.92920 0.94652 0.92477 0.89767 0.93195 0.88314 0.91676 0.83008 0.84434 0.95621 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.98 8.61 71.98 0.62 -5.36 16 2 C 0.18 8.71 1.21 44.17 0.05 8.76 16 3 H -0.01 -0.54 7.18 -2.39 -0.02 -0.56 16 4 C -0.51 -29.95 8.54 25.60 0.22 -29.73 16 5 H 0.04 2.43 7.22 -2.91 -0.02 2.41 16 6 C 0.01 0.69 5.45 84.65 0.46 1.16 16 7 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 8 Si 0.95 45.48 24.31 68.60 1.67 47.15 16 9 H -0.26 -11.92 6.92 99.48 0.69 -11.23 16 10 H -0.25 -11.26 6.53 99.48 0.65 -10.61 16 11 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 12 N -0.53 -22.19 5.02 -864.77 -4.34 -26.54 16 13 C 0.04 1.12 6.08 86.65 0.53 1.64 16 14 C -0.16 -4.05 6.63 31.77 0.21 -3.84 16 15 C 0.09 2.61 4.21 46.30 0.19 2.81 16 16 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 17 N -0.84 -20.81 9.42 -162.96 -1.53 -22.34 16 18 C 0.07 2.80 5.21 86.77 0.45 3.25 16 19 H 0.07 2.32 6.63 -2.38 -0.02 2.31 16 20 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 21 H 0.03 1.52 3.44 -2.39 -0.01 1.52 16 22 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 23 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.05 1.56 6.66 -2.39 -0.02 1.54 16 25 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.36 6.53 9.07 -89.69 -0.81 5.72 16 28 H 0.34 8.40 8.83 -89.69 -0.79 7.60 16 29 H 0.03 1.13 7.54 -2.38 -0.02 1.11 16 30 H 0.05 2.21 7.79 -2.39 -0.02 2.19 16 Total: -1.00 -66.85 232.59 -1.72 -68.57 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -0.54 Total: 14.41 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 2.74 Total: -21.31 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -5.58 Total: -108.82 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.67 Total: 47.15 kcal Total: -66.85 -1.72 -68.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130835015.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.757 kcal (2) G-P(sol) polarization free energy of solvation -66.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds