Wall clock time and date at job start Mon Mar 30 2020 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.78834 * 2 1 4 4 C 1.53245 * 109.62672 * 239.51775 * 2 1 3 5 5 H 1.09003 * 109.49412 * 174.13284 * 4 2 1 6 6 C 1.53008 * 109.49022 * 54.08118 * 4 2 1 7 7 N 1.46893 * 109.34182 * 294.12520 * 4 2 1 8 8 C 1.46903 * 111.26939 * 296.89565 * 7 4 2 9 9 C 1.52783 * 109.42276 * 62.95917 * 8 7 4 10 10 N 1.47070 * 108.77005 * 306.42862 * 9 8 7 11 11 C 1.36939 * 120.88527 * 231.11989 * 10 9 8 12 12 H 1.07996 * 119.99681 * 152.92611 * 11 10 9 13 13 C 1.38809 * 119.99559 * 333.20975 * 11 10 9 14 14 N 1.31615 * 120.00229 * 343.09661 * 13 11 10 15 15 Si 1.86801 * 119.99842 * 163.10603 * 13 11 10 16 16 H 1.48496 * 109.47318 * 59.99038 * 15 13 11 17 17 H 1.48497 * 109.47029 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46810 * 299.99190 * 15 13 11 19 19 H 1.09001 * 109.47103 * 299.51348 * 1 2 3 20 20 H 1.08999 * 109.47136 * 59.50773 * 1 2 3 21 21 H 1.08992 * 109.47691 * 179.51138 * 1 2 3 22 22 H 1.09001 * 109.46677 * 60.00079 * 6 4 2 23 23 H 1.09007 * 109.46817 * 179.97438 * 6 4 2 24 24 H 1.08999 * 109.47342 * 299.99673 * 6 4 2 25 25 H 1.00901 * 111.00271 * 172.74893 * 7 4 2 26 26 H 1.08993 * 109.49649 * 183.06561 * 8 7 4 27 27 H 1.09010 * 109.48905 * 303.11776 * 8 7 4 28 28 H 1.09005 * 109.55377 * 186.61117 * 9 8 7 29 29 H 1.08996 * 109.45381 * 66.18937 * 9 8 7 30 30 H 0.97000 * 120.00315 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0447 -0.7322 -1.2439 5 1 3.1297 -0.6413 -1.2966 6 6 1.4192 -0.1136 -2.4958 7 7 1.6745 -2.1513 -1.1611 8 6 2.3145 -2.8027 -0.0104 9 6 1.8163 -2.1563 1.2812 10 7 2.0241 -0.7030 1.1937 11 6 2.6654 -0.0231 2.1946 12 1 3.1949 0.8916 1.9726 13 6 2.6398 -0.5128 3.4931 14 7 1.7499 -1.4194 3.8372 15 14 3.8682 0.1152 4.7525 16 1 3.7013 1.5814 4.9185 17 1 3.6319 -0.5600 6.0539 18 1 5.2477 -0.1764 4.2864 19 1 -0.3633 0.5063 0.8943 20 1 -0.3633 0.5215 -0.8855 21 1 -0.3634 -1.0275 -0.0088 22 1 1.6921 0.9400 -2.5556 23 1 1.7859 -0.6344 -3.3804 24 1 0.3343 -0.2056 -2.4433 25 1 1.8965 -2.6336 -2.0192 26 1 2.0647 -3.8636 -0.0077 27 1 3.3959 -2.6838 -0.0803 28 1 2.3746 -2.5558 2.1279 29 1 0.7544 -2.3676 1.4067 30 1 1.7317 -1.7614 4.7447 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145335430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:32 Heat of formation + Delta-G solvation = 21.495329 kcal Electronic energy + Delta-G solvation = -12028.930576 eV Core-core repulsion = 10052.624996 eV Total energy + Delta-G solvation = -1976.305580 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.15005 -33.82549 -32.19172 -30.81923 -27.59305 -26.59312 -24.22134 -22.18475 -21.11995 -17.89048 -16.71638 -15.42424 -14.75410 -14.20126 -13.98349 -13.56927 -13.06832 -12.43818 -11.92012 -11.72727 -11.58207 -11.01853 -10.91235 -10.84044 -10.58968 -10.26007 -10.02048 -10.01591 -9.60564 -9.35568 -8.45988 -7.79256 -6.59480 -5.73287 -3.14268 3.40623 3.46110 3.47368 4.52362 4.84169 5.40489 5.42330 5.57956 5.85639 5.90452 6.14475 6.19970 6.29133 6.34829 6.42737 6.48522 6.59667 6.74199 6.86795 7.09479 7.20887 7.41967 7.71955 7.79043 7.87400 8.05866 8.49400 9.26775 9.90805 10.49889 11.35185 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.058273 B = 0.013535 C = 0.012744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.381897 B = 2068.225825 C = 2196.511058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.175 3.825 3 H 0.057 0.943 4 C 0.073 3.927 5 H 0.029 0.971 6 C -0.144 4.144 7 N -0.679 5.679 8 C 0.036 3.964 9 C 0.177 3.823 10 N -0.589 5.589 11 C -0.251 4.251 12 H 0.064 0.936 13 C 0.002 3.998 14 N -0.903 5.903 15 Si 0.902 3.098 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.285 1.285 19 H 0.044 0.956 20 H 0.035 0.965 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.321 0.679 26 H 0.059 0.941 27 H 0.019 0.981 28 H 0.085 0.915 29 H 0.025 0.975 30 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 -0.182 -8.609 8.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.067 3.933 3 H 0.075 0.925 4 C -0.038 4.038 5 H 0.047 0.953 6 C -0.202 4.202 7 N -0.310 5.310 8 C -0.095 4.095 9 C 0.051 3.949 10 N -0.311 5.311 11 C -0.381 4.381 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.547 5.547 15 Si 0.732 3.268 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.212 1.212 19 H 0.063 0.937 20 H 0.054 0.946 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.137 0.863 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.103 0.897 29 H 0.043 0.957 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.283 -0.121 -8.054 8.060 hybrid contribution 1.543 0.161 0.407 1.604 sum 1.260 0.039 -7.647 7.750 Atomic orbital electron populations 1.22142 0.98191 1.01578 0.99039 1.20560 0.92453 0.94114 0.86127 0.92453 1.21985 0.96508 0.89028 0.96313 0.95343 1.21882 1.01994 0.99904 0.96411 1.60372 1.62737 1.02432 1.05445 1.22636 0.95634 0.97263 0.93948 1.20740 0.98405 0.83231 0.92553 1.44166 1.66055 1.02604 1.18277 1.19147 1.24514 1.07639 0.86780 0.91832 1.25009 0.98112 0.99828 0.96722 1.70025 1.33689 1.32806 1.18221 0.86381 0.81387 0.78350 0.80721 1.20929 1.21639 1.21165 0.93674 0.94596 0.92342 0.92645 0.93841 0.91557 0.86332 0.92259 0.96319 0.89697 0.95674 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.66 37.16 0.32 -2.79 16 2 C 0.18 3.84 2.92 -67.49 -0.20 3.65 16 3 H 0.06 1.26 7.95 -51.93 -0.41 0.85 16 4 C 0.07 1.36 2.88 -67.59 -0.19 1.16 16 5 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 6 C -0.14 -2.12 8.91 37.16 0.33 -1.79 16 7 N -0.68 -12.44 5.97 -106.71 -0.64 -13.08 16 8 C 0.04 0.72 6.68 -3.93 -0.03 0.70 16 9 C 0.18 4.40 4.99 -3.84 -0.02 4.38 16 10 N -0.59 -15.28 2.74 -164.76 -0.45 -15.73 16 11 C -0.25 -7.08 9.63 -15.06 -0.15 -7.23 16 12 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 13 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 14 N -0.90 -26.67 11.16 55.49 0.62 -26.05 16 15 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 20 H 0.04 0.62 6.42 -51.93 -0.33 0.29 16 21 H 0.06 1.27 7.09 -51.93 -0.37 0.90 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 24 H 0.07 0.98 6.38 -51.93 -0.33 0.65 16 25 H 0.32 4.98 8.77 -39.29 -0.34 4.63 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.08 2.33 6.13 -51.93 -0.32 2.01 16 29 H 0.03 0.67 7.65 -51.93 -0.40 0.28 16 30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 235.82 15.07 3.55 3.55 Total: -1.00 -29.67 235.82 -6.55 -36.22 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.59 Total: 0.01 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.02 Total: -1.95 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.47 Total: -54.86 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.67 -6.55 -36.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145335430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.716 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds