Wall clock time and date at job start Mon Mar 30 2020 02:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47243 * 2 1 4 4 N 1.46895 * 109.47227 * 120.00468 * 2 1 3 5 5 C 1.53008 * 109.46783 * 240.00538 * 2 1 3 6 6 H 1.09007 * 110.88318 * 303.87883 * 5 2 1 7 7 C 1.55153 * 111.00177 * 180.02562 * 5 2 1 8 8 C 1.54328 * 102.94160 * 206.41824 * 7 5 2 9 9 N 1.47023 * 107.26806 * 22.19214 * 8 7 5 10 10 C 1.36942 * 125.65003 * 181.02158 * 9 8 7 11 11 H 1.07994 * 120.00122 * 185.20459 * 10 9 8 12 12 C 1.38812 * 119.99681 * 4.92936 * 10 9 8 13 13 N 1.31619 * 119.99765 * 353.26978 * 12 10 9 14 14 Si 1.86798 * 119.99955 * 173.27343 * 12 10 9 15 15 H 1.48504 * 109.47027 * 94.98785 * 14 12 10 16 16 H 1.48503 * 109.47168 * 214.98738 * 14 12 10 17 17 H 1.48498 * 109.47045 * 334.98617 * 14 12 10 18 18 C 1.47426 * 108.70551 * 1.28523 * 9 8 7 19 19 H 1.08994 * 109.47243 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.46518 * 300.00198 * 1 2 3 21 21 H 1.09003 * 109.46765 * 59.99461 * 1 2 3 22 22 H 1.00899 * 110.99841 * 296.04337 * 4 2 1 23 23 H 1.00900 * 111.00395 * 59.99723 * 4 2 1 24 24 H 1.09003 * 110.72382 * 88.05701 * 7 5 2 25 25 H 1.09003 * 110.72292 * 324.78338 * 7 5 2 26 26 H 1.08993 * 109.88712 * 262.77704 * 8 7 5 27 27 H 1.09000 * 110.01043 * 141.67940 * 8 7 5 28 28 H 0.97009 * 119.99923 * 179.97438 * 13 12 10 29 29 H 1.09003 * 110.36693 * 94.48278 * 18 9 8 30 30 H 1.08997 * 110.36961 * 216.80453 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0400 -0.7212 -1.2494 6 1 1.6342 -1.7312 -1.3079 7 6 3.5910 -0.7425 -1.2850 8 6 3.9007 -0.8406 -2.7937 9 7 2.7214 -0.3398 -3.5148 10 6 2.5849 -0.2781 -4.8760 11 1 1.7113 0.1847 -5.3107 12 6 3.5721 -0.8054 -5.6971 13 7 4.6976 -1.2443 -5.1746 14 14 3.3034 -0.8919 -7.5436 15 1 3.9029 0.3044 -8.1877 16 1 3.9468 -2.1179 -8.0806 17 1 1.8469 -0.9310 -7.8306 18 6 1.7126 0.0910 -2.5298 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3632 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.7503 -0.1991 2.0371 23 1 1.6962 -1.6480 1.2227 24 1 3.9771 -1.6131 -0.7547 25 1 3.9991 0.1775 -0.8666 26 1 4.0889 -1.8788 -3.0669 27 1 4.7705 -0.2301 -3.0364 28 1 5.3874 -1.6132 -5.7483 29 1 1.8028 1.1601 -2.3372 30 1 0.7100 -0.1481 -2.8843 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157392098.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:04 Heat of formation + Delta-G solvation = -9.157383 kcal Electronic energy + Delta-G solvation = -11596.594661 eV Core-core repulsion = 9618.959879 eV Total energy + Delta-G solvation = -1977.634782 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.63348 -36.56933 -34.03506 -31.05781 -30.24230 -28.22500 -26.55374 -23.07266 -21.81407 -20.87416 -18.86881 -16.85323 -16.81800 -16.32943 -15.60635 -14.83431 -14.51926 -13.91414 -13.87268 -13.73070 -13.43979 -13.01519 -12.71779 -12.65989 -12.03240 -11.98383 -11.82789 -11.59176 -11.35700 -11.24410 -10.68185 -9.47848 -8.89318 -7.85640 -5.20802 1.44455 1.47006 1.56599 2.49446 3.31358 3.61669 3.67178 3.97953 4.09869 4.33869 4.48660 4.49828 4.55906 4.74875 4.87437 5.02565 5.05888 5.16690 5.23925 5.29905 5.45744 5.53289 5.70925 5.79475 6.20226 6.37176 6.76443 7.09999 7.78456 8.44619 9.25383 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.080746 B = 0.010265 C = 0.009341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.682011 B = 2727.105648 C = 2996.838823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.107 3.893 3 H 0.074 0.926 4 N -0.846 5.846 5 C -0.079 4.079 6 H 0.066 0.934 7 C -0.106 4.106 8 C 0.180 3.820 9 N -0.631 5.631 10 C -0.246 4.246 11 H 0.083 0.917 12 C -0.070 4.070 13 N -0.952 5.952 14 Si 0.981 3.019 15 H -0.286 1.286 16 H -0.293 1.293 17 H -0.266 1.266 18 C 0.139 3.861 19 H 0.056 0.944 20 H 0.070 0.930 21 H 0.055 0.945 22 H 0.350 0.650 23 H 0.344 0.656 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.008 0.992 27 H -0.002 1.002 28 H 0.246 0.754 29 H 0.022 0.978 30 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 1.386 10.764 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.005 4.005 3 H 0.092 0.908 4 N -0.376 5.376 5 C -0.099 4.099 6 H 0.085 0.915 7 C -0.144 4.144 8 C 0.055 3.945 9 N -0.358 5.358 10 C -0.375 4.375 11 H 0.101 0.899 12 C -0.263 4.263 13 N -0.601 5.601 14 Si 0.809 3.191 15 H -0.213 1.213 16 H -0.219 1.219 17 H -0.191 1.191 18 C 0.013 3.987 19 H 0.075 0.925 20 H 0.089 0.911 21 H 0.074 0.926 22 H 0.164 0.836 23 H 0.157 0.843 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.026 0.974 27 H 0.017 0.983 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.812 1.473 10.306 12.441 hybrid contribution -0.669 -0.216 -1.041 1.256 sum -7.481 1.257 9.265 11.974 Atomic orbital electron populations 1.22564 0.96401 1.02264 1.02605 1.21195 0.92788 0.97384 0.89114 0.90777 1.58751 1.67830 1.06874 1.04133 1.22252 0.95383 0.98645 0.93614 0.91540 1.22511 0.95975 1.01409 0.94505 1.20979 0.88511 0.95856 0.89174 1.44870 1.15143 1.74156 1.01588 1.19506 1.04477 1.31831 0.81721 0.89917 1.25749 0.96263 1.01331 1.02939 1.70244 1.06949 1.48114 1.34763 0.85030 0.77909 0.76808 0.79393 1.21308 1.21915 1.19094 1.21759 0.92057 0.95841 0.89032 0.92458 0.91091 0.92572 0.83595 0.84321 0.91006 0.92003 0.97388 0.98344 0.94430 0.96009 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.81 9.34 71.98 0.67 -3.14 16 2 C 0.11 2.76 2.88 44.92 0.13 2.89 16 3 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 4 N -0.85 -18.37 8.89 -168.67 -1.50 -19.87 16 5 C -0.08 -2.76 2.74 -9.33 -0.03 -2.79 16 6 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 7 C -0.11 -4.23 6.09 31.78 0.19 -4.03 16 8 C 0.18 9.58 5.38 86.73 0.47 10.05 16 9 N -0.63 -34.44 3.39 -691.55 -2.35 -36.79 16 10 C -0.25 -14.48 10.27 84.03 0.86 -13.62 16 11 H 0.08 4.61 7.84 -2.91 -0.02 4.58 16 12 C -0.07 -4.16 5.48 84.86 0.46 -3.70 16 13 N -0.95 -59.93 10.35 21.65 0.22 -59.71 16 14 Si 0.98 47.16 29.56 68.60 2.03 49.19 16 15 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 16 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C 0.14 5.86 5.96 86.93 0.52 6.38 16 19 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 20 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.06 1.30 7.51 -2.39 -0.02 1.28 16 22 H 0.35 5.84 9.07 -89.69 -0.81 5.03 16 23 H 0.34 6.81 9.00 -89.69 -0.81 6.01 16 24 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.06 2.38 8.04 -2.39 -0.02 2.36 16 26 H 0.01 0.47 7.30 -2.39 -0.02 0.45 16 27 H 0.00 -0.10 7.59 -2.39 -0.02 -0.12 16 28 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 29 H 0.02 0.91 7.99 -2.39 -0.02 0.89 16 30 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 Total: -1.00 -68.06 243.02 1.19 -66.87 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -0.50 Total: 8.24 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 3.28 Total: -7.95 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -3.62 Total: -116.36 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -68.06 1.19 -66.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157392098.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.716 kcal (2) G-P(sol) polarization free energy of solvation -68.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds