Wall clock time and date at job start Mon Mar 30 2020 02:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46960 * 2 1 4 4 N 1.46900 * 109.47437 * 239.99399 * 2 1 3 5 5 C 1.52996 * 109.47010 * 119.99586 * 2 1 3 6 6 H 1.08997 * 110.92180 * 62.44768 * 5 2 1 7 7 C 1.55155 * 111.00532 * 186.35382 * 5 2 1 8 8 C 1.54327 * 102.94571 * 153.57522 * 7 5 2 9 9 N 1.47024 * 107.26774 * 337.80617 * 8 7 5 10 10 C 1.36941 * 125.64618 * 179.20447 * 9 8 7 11 11 H 1.08005 * 119.99780 * 179.68989 * 10 9 8 12 12 C 1.38813 * 119.99913 * 359.69358 * 10 9 8 13 13 N 1.31616 * 119.99926 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99719 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47311 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47271 * 120.00121 * 14 12 10 17 17 H 1.48501 * 109.46665 * 239.99715 * 14 12 10 18 18 C 1.47426 * 108.70449 * 358.94057 * 9 8 7 19 19 H 1.08997 * 109.47730 * 300.00368 * 1 2 3 20 20 H 1.09001 * 109.46923 * 60.00860 * 1 2 3 21 21 H 1.09002 * 109.46960 * 179.97438 * 1 2 3 22 22 H 1.00899 * 111.00003 * 176.04686 * 4 2 1 23 23 H 1.00896 * 111.00162 * 300.00442 * 4 2 1 24 24 H 1.08999 * 110.71965 * 271.93488 * 7 5 2 25 25 H 1.09000 * 110.72417 * 35.03508 * 7 5 2 26 26 H 1.08995 * 109.88184 * 218.39040 * 8 7 5 27 27 H 1.09002 * 109.88385 * 97.22047 * 8 7 5 28 28 H 0.97001 * 119.99407 * 180.02562 * 13 12 10 29 29 H 1.09002 * 110.36518 * 142.96440 * 18 9 8 30 30 H 1.08997 * 110.36787 * 265.28818 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0400 -0.7211 1.2493 6 1 1.7257 -1.7648 1.2518 7 6 3.5826 -0.6046 1.3680 8 6 3.8232 -0.7337 2.8869 9 7 2.5679 -0.3695 3.5601 10 6 2.3590 -0.3697 4.9135 11 1 1.3977 -0.0797 5.3115 12 6 3.3826 -0.7426 5.7737 13 7 4.5538 -1.0964 5.2886 14 14 3.0973 -0.7436 7.6198 15 1 1.7063 -0.3094 7.9060 16 1 3.3083 -2.1136 8.1526 17 1 4.0508 0.1920 8.2685 18 6 1.5734 0.0022 2.5373 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 3.0263 -0.6502 -1.2557 23 1 1.6962 -1.6480 -1.2226 24 1 4.0731 -1.4155 0.8296 25 1 3.9256 0.3629 1.0014 26 1 4.6193 -0.0560 3.1950 27 1 4.0916 -1.7609 3.1337 28 1 5.2690 -1.3574 5.8898 29 1 0.5818 -0.3441 2.8288 30 1 1.5700 1.0816 2.3861 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157392237.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:07 Heat of formation + Delta-G solvation = 11.004552 kcal Electronic energy + Delta-G solvation = -11616.416432 eV Core-core repulsion = 9639.655938 eV Total energy + Delta-G solvation = -1976.760494 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.18668 -34.96774 -32.02390 -29.27053 -29.05903 -26.77257 -24.53597 -21.60057 -19.97434 -19.48279 -16.85740 -15.85746 -14.99111 -14.53564 -14.05114 -13.63579 -12.89020 -12.41410 -12.15451 -11.81643 -11.79070 -11.53526 -10.92085 -10.88438 -10.69105 -10.18232 -10.05167 -9.94860 -9.77230 -9.66681 -8.58746 -8.43038 -6.79653 -5.69222 -3.02254 3.40486 3.45743 3.48452 4.51601 4.79419 5.11189 5.29110 5.45527 5.53299 5.76338 5.82608 5.85327 5.96124 6.12453 6.27808 6.38832 6.42707 6.52634 6.59630 6.74141 6.98129 7.33605 7.58530 7.61993 7.65130 7.84346 8.28641 9.24758 9.85481 10.52404 11.42758 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.080704 B = 0.010317 C = 0.009358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.865003 B = 2713.402430 C = 2991.458640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.096 3.904 3 H 0.077 0.923 4 N -0.845 5.845 5 C -0.136 4.136 6 H 0.069 0.931 7 C -0.141 4.141 8 C 0.179 3.821 9 N -0.608 5.608 10 C -0.226 4.226 11 H 0.078 0.922 12 C -0.011 4.011 13 N -0.923 5.923 14 Si 0.912 3.088 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.291 1.291 18 C 0.145 3.855 19 H 0.062 0.938 20 H 0.055 0.945 21 H 0.050 0.950 22 H 0.339 0.661 23 H 0.335 0.665 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.251 0.749 29 H 0.036 0.964 30 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 0.576 -8.863 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.016 4.016 3 H 0.096 0.904 4 N -0.373 5.373 5 C -0.157 4.157 6 H 0.088 0.912 7 C -0.180 4.180 8 C 0.054 3.946 9 N -0.334 5.334 10 C -0.355 4.355 11 H 0.096 0.904 12 C -0.207 4.207 13 N -0.571 5.571 14 Si 0.743 3.257 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.218 1.218 18 C 0.018 3.982 19 H 0.081 0.919 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.151 0.849 23 H 0.147 0.853 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -4.600 1.084 -9.079 10.236 hybrid contribution 0.506 -0.708 1.755 1.959 sum -4.094 0.376 -7.324 8.399 Atomic orbital electron populations 1.21794 0.94915 1.01648 1.01636 1.21413 0.95118 0.97880 0.87176 0.90446 1.59081 1.16230 1.20992 1.41000 1.23176 0.96654 0.99777 0.96085 0.91219 1.22913 0.94665 0.99923 1.00463 1.21098 0.88717 0.99828 0.84947 1.44529 1.08610 1.78888 1.01413 1.19132 0.97579 1.38488 0.80293 0.90423 1.24817 0.95970 1.01767 0.98162 1.69987 1.02807 1.51523 1.32780 0.86037 0.77313 0.77226 0.85171 1.20502 1.21782 1.21761 1.21509 0.93108 0.95693 0.87847 0.91923 0.92601 0.93115 0.84860 0.85334 0.92773 0.92591 0.94155 0.93813 0.93877 0.94554 0.96492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.28 37.16 0.34 -1.52 16 2 C 0.10 1.39 2.92 -67.72 -0.20 1.19 16 3 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 4 N -0.85 -10.80 9.21 -4.67 -0.04 -10.84 16 5 C -0.14 -2.38 2.75 -88.47 -0.24 -2.63 16 6 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 7 C -0.14 -2.67 5.76 -24.90 -0.14 -2.82 16 8 C 0.18 4.49 5.37 -3.06 -0.02 4.47 16 9 N -0.61 -16.09 3.39 -170.07 -0.58 -16.67 16 10 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 11 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 12 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 13 N -0.92 -27.79 10.31 55.49 0.57 -27.21 16 14 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 C 0.15 3.08 5.66 -2.53 -0.01 3.07 16 19 H 0.06 0.83 7.27 -51.93 -0.38 0.46 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.34 4.13 8.44 -39.29 -0.33 3.80 16 23 H 0.33 3.95 9.00 -39.29 -0.35 3.60 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 1.01 8.01 -51.93 -0.42 0.59 16 26 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 27 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 28 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 30 H 0.02 0.36 8.04 -51.93 -0.42 -0.05 16 LS Contribution 241.82 15.07 3.64 3.64 Total: -1.00 -30.54 241.82 -6.69 -37.23 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -4.74 Total: 1.67 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.52 Total: -5.33 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.05 Total: -54.72 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.54 -6.69 -37.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157392237.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.237 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds