Wall clock time and date at job start Mon Mar 30 2020 02:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46960 * 2 1 4 4 N 1.46900 * 109.47437 * 239.99399 * 2 1 3 5 5 C 1.52996 * 109.47010 * 119.99586 * 2 1 3 6 6 H 1.08997 * 110.92180 * 62.44768 * 5 2 1 7 7 C 1.55155 * 111.00532 * 186.35382 * 5 2 1 8 8 C 1.54327 * 102.94571 * 153.57522 * 7 5 2 9 9 N 1.47024 * 107.26774 * 337.80617 * 8 7 5 10 10 C 1.36941 * 125.64618 * 179.20447 * 9 8 7 11 11 H 1.08005 * 119.99780 * 179.68989 * 10 9 8 12 12 C 1.38813 * 119.99913 * 359.69358 * 10 9 8 13 13 N 1.31616 * 119.99926 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99719 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47311 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47271 * 120.00121 * 14 12 10 17 17 H 1.48501 * 109.46665 * 239.99715 * 14 12 10 18 18 C 1.47426 * 108.70449 * 358.94057 * 9 8 7 19 19 H 1.08997 * 109.47730 * 300.00368 * 1 2 3 20 20 H 1.09001 * 109.46923 * 60.00860 * 1 2 3 21 21 H 1.09002 * 109.46960 * 179.97438 * 1 2 3 22 22 H 1.00899 * 111.00003 * 176.04686 * 4 2 1 23 23 H 1.00896 * 111.00162 * 300.00442 * 4 2 1 24 24 H 1.08999 * 110.71965 * 271.93488 * 7 5 2 25 25 H 1.09000 * 110.72417 * 35.03508 * 7 5 2 26 26 H 1.08995 * 109.88184 * 218.39040 * 8 7 5 27 27 H 1.09002 * 109.88385 * 97.22047 * 8 7 5 28 28 H 0.97001 * 119.99407 * 180.02562 * 13 12 10 29 29 H 1.09002 * 110.36518 * 142.96440 * 18 9 8 30 30 H 1.08997 * 110.36787 * 265.28818 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0400 -0.7211 1.2493 6 1 1.7257 -1.7648 1.2518 7 6 3.5826 -0.6046 1.3680 8 6 3.8232 -0.7337 2.8869 9 7 2.5679 -0.3695 3.5601 10 6 2.3590 -0.3697 4.9135 11 1 1.3977 -0.0797 5.3115 12 6 3.3826 -0.7426 5.7737 13 7 4.5538 -1.0964 5.2886 14 14 3.0973 -0.7436 7.6198 15 1 1.7063 -0.3094 7.9060 16 1 3.3083 -2.1136 8.1526 17 1 4.0508 0.1920 8.2685 18 6 1.5734 0.0022 2.5373 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 3.0263 -0.6502 -1.2557 23 1 1.6962 -1.6480 -1.2226 24 1 4.0731 -1.4155 0.8296 25 1 3.9256 0.3629 1.0014 26 1 4.6193 -0.0560 3.1950 27 1 4.0916 -1.7609 3.1337 28 1 5.2690 -1.3574 5.8898 29 1 0.5818 -0.3441 2.8288 30 1 1.5700 1.0816 2.3861 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157392237.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:07 Heat of formation + Delta-G solvation = -10.871940 kcal Electronic energy + Delta-G solvation = -11617.365068 eV Core-core repulsion = 9639.655938 eV Total energy + Delta-G solvation = -1977.709130 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.76343 -36.52871 -33.96796 -31.05435 -30.40909 -28.30636 -26.54383 -23.02218 -21.89872 -20.88627 -18.91231 -17.16697 -16.68286 -16.24833 -15.83034 -14.91207 -14.47713 -14.08620 -13.93898 -13.57014 -13.12636 -12.88629 -12.81712 -12.73889 -12.01530 -11.97740 -11.85671 -11.70952 -11.49985 -11.37624 -10.75217 -9.56157 -8.91901 -7.88149 -5.23925 1.43136 1.44633 1.55199 2.47176 3.29944 3.58268 3.73945 3.86756 3.95764 4.22429 4.46276 4.51179 4.60599 4.70928 4.85711 4.95871 5.04986 5.10444 5.24155 5.36435 5.42276 5.46632 5.62967 5.72982 6.17210 6.29155 6.66310 7.07543 7.75518 8.40519 9.22697 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.080704 B = 0.010317 C = 0.009358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.865003 B = 2713.402430 C = 2991.458640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.107 3.893 3 H 0.075 0.925 4 N -0.840 5.840 5 C -0.118 4.118 6 H 0.068 0.932 7 C -0.126 4.126 8 C 0.184 3.816 9 N -0.632 5.632 10 C -0.244 4.244 11 H 0.083 0.917 12 C -0.071 4.071 13 N -0.953 5.953 14 Si 0.981 3.019 15 H -0.264 1.264 16 H -0.291 1.291 17 H -0.291 1.291 18 C 0.139 3.861 19 H 0.057 0.943 20 H 0.068 0.932 21 H 0.055 0.945 22 H 0.345 0.655 23 H 0.343 0.657 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.002 0.998 27 H 0.007 0.993 28 H 0.246 0.754 29 H 0.040 0.960 30 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 0.756 -9.885 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.005 4.005 3 H 0.093 0.907 4 N -0.368 5.368 5 C -0.139 4.139 6 H 0.086 0.914 7 C -0.164 4.164 8 C 0.059 3.941 9 N -0.359 5.359 10 C -0.373 4.373 11 H 0.100 0.900 12 C -0.264 4.264 13 N -0.603 5.603 14 Si 0.809 3.191 15 H -0.188 1.188 16 H -0.218 1.218 17 H -0.218 1.218 18 C 0.014 3.986 19 H 0.076 0.924 20 H 0.087 0.913 21 H 0.074 0.926 22 H 0.158 0.842 23 H 0.156 0.844 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.020 0.980 27 H 0.025 0.975 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.771 1.268 -10.136 11.732 hybrid contribution 0.848 -0.753 2.049 2.342 sum -4.923 0.515 -8.087 9.482 Atomic orbital electron populations 1.21769 0.93736 1.02177 1.02067 1.21285 0.95995 0.97359 0.85896 0.90670 1.59068 1.16753 1.21606 1.39372 1.23118 0.95207 0.99655 0.95908 0.91405 1.22764 0.96150 1.01658 0.95814 1.20884 0.87628 0.96542 0.89062 1.44891 1.10240 1.78921 1.01805 1.19550 0.97813 1.38004 0.81946 0.89955 1.25724 0.95834 1.01953 1.02850 1.70217 1.03525 1.52519 1.34007 0.84965 0.77793 0.76878 0.79438 1.18841 1.21785 1.21819 1.21721 0.92245 0.96319 0.88337 0.92385 0.91316 0.92575 0.84246 0.84393 0.90405 0.91206 0.97994 0.97479 0.94440 0.94189 0.95927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.28 71.98 0.67 -2.58 16 2 C 0.11 2.76 2.92 44.91 0.13 2.90 16 3 H 0.08 2.03 8.11 -2.39 -0.02 2.01 16 4 N -0.84 -18.54 9.21 -168.68 -1.55 -20.09 16 5 C -0.12 -3.89 2.75 -9.40 -0.03 -3.92 16 6 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 7 C -0.13 -4.58 5.76 31.78 0.18 -4.39 16 8 C 0.18 9.44 5.37 86.73 0.47 9.91 16 9 N -0.63 -33.80 3.39 -691.96 -2.35 -36.15 16 10 C -0.24 -14.18 10.28 84.03 0.86 -13.31 16 11 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 12 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 13 N -0.95 -59.16 10.31 21.65 0.22 -58.93 16 14 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 15 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 17 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 18 C 0.14 5.77 5.66 86.86 0.49 6.26 16 19 H 0.06 1.40 7.27 -2.39 -0.02 1.38 16 20 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.34 7.18 8.44 -89.69 -0.76 6.43 16 23 H 0.34 6.88 9.00 -89.70 -0.81 6.07 16 24 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.07 2.37 8.01 -2.39 -0.02 2.35 16 26 H 0.00 0.10 7.51 -2.39 -0.02 0.09 16 27 H 0.01 0.40 7.38 -2.39 -0.02 0.38 16 28 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.04 1.62 8.05 -2.39 -0.02 1.60 16 30 H 0.02 0.93 8.04 -2.39 -0.02 0.91 16 Total: -1.00 -66.46 241.82 1.15 -65.31 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -0.44 Total: 9.85 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 3.24 Total: -8.84 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -3.68 Total: -115.17 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -66.46 1.15 -65.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157392237.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.439 kcal (2) G-P(sol) polarization free energy of solvation -66.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds