Wall clock time and date at job start Mon Mar 30 2020 02:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48720 * 111.01831 * 2 1 4 4 C 1.54381 * 104.51692 * 158.96284 * 3 2 1 5 5 C 1.54257 * 105.14978 * 336.27274 * 4 3 2 6 6 H 1.08995 * 110.32672 * 118.84838 * 5 4 3 7 7 C 1.53009 * 110.32339 * 240.95010 * 5 4 3 8 8 H 1.09005 * 109.46832 * 59.99599 * 7 5 4 9 9 N 1.46903 * 109.46722 * 300.00038 * 7 5 4 10 10 C 1.50687 * 109.47403 * 180.02562 * 7 5 4 11 11 H 1.08008 * 120.00268 * 359.97438 * 10 7 5 12 12 C 1.37875 * 120.00229 * 180.02562 * 10 7 5 13 13 N 1.31517 * 120.00404 * 179.97438 * 12 10 7 14 14 Si 1.86800 * 120.00098 * 359.97438 * 12 10 7 15 15 H 1.48497 * 109.47022 * 89.99604 * 14 12 10 16 16 H 1.48494 * 109.47485 * 210.00564 * 14 12 10 17 17 H 1.48506 * 109.46977 * 330.00239 * 14 12 10 18 18 C 1.48567 * 110.99718 * 115.50982 * 2 1 3 19 19 H 1.09001 * 109.47412 * 304.49367 * 1 2 3 20 20 H 1.09003 * 109.46556 * 64.49268 * 1 2 3 21 21 H 1.08995 * 109.47730 * 184.49237 * 1 2 3 22 22 H 1.09004 * 110.38960 * 40.24251 * 3 2 1 23 23 H 1.08996 * 110.50963 * 277.74694 * 3 2 1 24 24 H 1.09002 * 110.32526 * 217.32092 * 4 3 2 25 25 H 1.08998 * 110.32190 * 95.21733 * 4 3 2 26 26 H 1.00899 * 111.00182 * 299.99511 * 9 7 5 27 27 H 1.00898 * 110.99987 * 63.95520 * 9 7 5 28 28 H 0.96995 * 120.00435 * 179.97438 * 13 12 10 29 29 H 1.08999 * 110.41133 * 82.17552 * 18 2 1 30 30 H 1.09001 * 110.41003 * 319.73948 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0024 1.3883 0.0000 4 6 3.4433 1.2492 0.5365 5 6 3.4432 -0.0562 1.3584 6 1 4.1483 -0.7709 0.9341 7 6 3.7971 0.2350 2.8183 8 1 3.0627 0.9212 3.2402 9 7 5.1321 0.8442 2.8863 10 6 3.7921 -1.0516 3.6027 11 1 3.5594 -1.9839 3.1095 12 6 4.0836 -1.0386 4.9502 13 7 4.0788 -2.1615 5.6349 14 14 4.4855 0.5738 5.8034 15 1 3.2351 1.1849 6.3212 16 1 5.4160 0.3181 6.9321 17 1 5.1250 1.5003 4.8350 18 6 2.0014 -0.5973 1.2518 19 1 -0.3634 0.5820 0.8470 20 1 -0.3632 0.4426 -0.9276 21 1 -0.3634 -1.0244 0.0805 22 1 1.4106 2.0225 0.6601 23 1 2.0109 1.7941 -1.0116 24 1 3.6937 2.0976 1.1733 25 1 4.1497 1.1758 -0.2904 26 1 5.8312 0.2272 2.5008 27 1 5.1449 1.7400 2.4221 28 1 4.2843 -2.1524 6.5828 29 1 2.0077 -1.6850 1.1812 30 1 1.4097 -0.2746 2.1085 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000208851603.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:51 Heat of formation + Delta-G solvation = 7.064113 kcal Electronic energy + Delta-G solvation = -11711.118007 eV Core-core repulsion = 9734.186642 eV Total energy + Delta-G solvation = -1976.931365 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.71303 -34.88426 -31.96836 -30.51365 -28.64246 -25.86010 -25.10948 -21.56305 -20.67898 -19.03854 -16.84628 -15.46727 -15.19776 -14.62746 -14.06870 -13.75505 -13.41599 -12.78927 -12.45120 -12.06448 -11.69200 -11.23446 -11.20443 -11.05715 -10.83122 -10.55487 -10.14858 -9.72505 -9.59741 -9.02965 -8.47095 -8.18633 -7.07357 -5.94991 -4.03637 3.53645 3.64000 3.96189 4.41474 4.75845 5.11498 5.15613 5.38239 5.40525 5.61850 5.67685 5.81007 5.92274 5.99175 6.01200 6.15495 6.31886 6.35256 6.54596 6.60967 6.72706 7.21355 7.21749 7.36453 7.72035 8.26179 8.41247 8.78579 9.06256 9.71585 11.15138 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053283 B = 0.012858 C = 0.011576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.365325 B = 2177.099622 C = 2418.179820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.525 5.525 3 C 0.034 3.966 4 C -0.127 4.127 5 C -0.106 4.106 6 H 0.069 0.931 7 C 0.194 3.806 8 H 0.031 0.969 9 N -0.838 5.838 10 C -0.522 4.522 11 H 0.069 0.931 12 C 0.082 3.918 13 N -0.904 5.904 14 Si 0.866 3.134 15 H -0.300 1.300 16 H -0.306 1.306 17 H -0.193 1.193 18 C 0.053 3.947 19 H 0.026 0.974 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.039 0.961 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.329 0.671 27 H 0.304 0.696 28 H 0.261 0.739 29 H 0.077 0.923 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 7.336 -9.494 12.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.249 5.249 3 C -0.094 4.094 4 C -0.165 4.165 5 C -0.128 4.128 6 H 0.087 0.913 7 C 0.084 3.916 8 H 0.049 0.951 9 N -0.367 5.367 10 C -0.560 4.560 11 H 0.087 0.913 12 C -0.122 4.122 13 N -0.541 5.541 14 Si 0.694 3.306 15 H -0.228 1.228 16 H -0.233 1.233 17 H -0.114 1.114 18 C -0.075 4.075 19 H 0.044 0.956 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.057 0.943 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.142 0.858 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.215 6.957 -9.023 11.839 hybrid contribution -0.264 0.916 0.310 1.002 sum -3.480 7.873 -8.713 12.248 Atomic orbital electron populations 1.22458 0.88974 1.01759 1.00228 1.65436 1.07444 1.14946 1.37069 1.23084 0.95909 0.90414 0.99987 1.22450 0.95719 0.99073 0.99240 1.22625 0.96277 0.94971 0.98883 0.91281 1.19510 0.87105 0.95516 0.89430 0.95104 1.60058 1.08265 1.06140 1.62231 1.20874 1.49092 0.92483 0.93564 0.91317 1.25017 0.92915 0.96827 0.97429 1.69972 1.48646 1.27144 1.08357 0.87220 0.78002 0.86835 0.78577 1.22783 1.23327 1.11410 1.23013 0.95409 0.99854 0.89179 0.95584 0.92021 0.91497 0.94298 0.91079 0.91648 0.92058 0.85842 0.88455 0.92988 0.90454 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.53 60.06 0.57 0.78 16 2 N -0.52 -8.64 5.66 -238.08 -1.35 -9.99 16 3 C 0.03 0.51 6.51 -2.09 -0.01 0.50 16 4 C -0.13 -1.99 6.23 -25.35 -0.16 -2.15 16 5 C -0.11 -2.04 2.74 -89.24 -0.24 -2.29 16 6 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 7 C 0.19 4.34 1.49 -68.86 -0.10 4.24 16 8 H 0.03 0.73 7.53 -51.93 -0.39 0.34 16 9 N -0.84 -17.09 5.77 -5.65 -0.03 -17.12 16 10 C -0.52 -14.39 8.83 -34.45 -0.30 -14.70 16 11 H 0.07 2.06 7.86 -52.48 -0.41 1.65 16 12 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 13 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 14 Si 0.87 21.96 26.94 -169.99 -4.58 17.38 16 15 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 16 H -0.31 -8.00 7.11 56.52 0.40 -7.59 16 17 H -0.19 -4.51 5.17 56.52 0.29 -4.22 16 18 C 0.05 1.01 5.42 -2.18 -0.01 1.00 16 19 H 0.03 0.36 7.98 -51.93 -0.41 -0.06 16 20 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.04 0.57 7.91 -51.93 -0.41 0.16 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.99 6.52 -51.93 -0.34 0.65 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.33 6.55 8.99 -39.29 -0.35 6.20 16 27 H 0.30 5.31 7.44 -39.29 -0.29 5.02 16 28 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 30 H 0.05 1.00 7.66 -51.93 -0.40 0.61 16 LS Contribution 236.98 15.07 3.57 3.57 Total: -1.00 -30.48 236.98 -6.76 -37.25 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.79 Total: 6.66 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.36 Total: -10.34 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.61 Total: -54.52 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.58 Total: 17.38 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.48 -6.76 -37.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000208851603.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.313 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds