Wall clock time and date at job start Mon Mar 30 2020 02:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48720 * 111.01831 * 2 1 4 4 C 1.54381 * 104.51692 * 158.96284 * 3 2 1 5 5 C 1.54257 * 105.14978 * 336.27274 * 4 3 2 6 6 H 1.08995 * 110.32672 * 118.84838 * 5 4 3 7 7 C 1.53009 * 110.32339 * 240.95010 * 5 4 3 8 8 H 1.09005 * 109.46832 * 59.99599 * 7 5 4 9 9 N 1.46903 * 109.46722 * 300.00038 * 7 5 4 10 10 C 1.50687 * 109.47403 * 180.02562 * 7 5 4 11 11 H 1.08008 * 120.00268 * 359.97438 * 10 7 5 12 12 C 1.37875 * 120.00229 * 180.02562 * 10 7 5 13 13 N 1.31517 * 120.00404 * 179.97438 * 12 10 7 14 14 Si 1.86800 * 120.00098 * 359.97438 * 12 10 7 15 15 H 1.48497 * 109.47022 * 89.99604 * 14 12 10 16 16 H 1.48494 * 109.47485 * 210.00564 * 14 12 10 17 17 H 1.48506 * 109.46977 * 330.00239 * 14 12 10 18 18 C 1.48567 * 110.99718 * 115.50982 * 2 1 3 19 19 H 1.09001 * 109.47412 * 304.49367 * 1 2 3 20 20 H 1.09003 * 109.46556 * 64.49268 * 1 2 3 21 21 H 1.08995 * 109.47730 * 184.49237 * 1 2 3 22 22 H 1.09004 * 110.38960 * 40.24251 * 3 2 1 23 23 H 1.08996 * 110.50963 * 277.74694 * 3 2 1 24 24 H 1.09002 * 110.32526 * 217.32092 * 4 3 2 25 25 H 1.08998 * 110.32190 * 95.21733 * 4 3 2 26 26 H 1.00899 * 111.00182 * 299.99511 * 9 7 5 27 27 H 1.00898 * 110.99987 * 63.95520 * 9 7 5 28 28 H 0.96995 * 120.00435 * 179.97438 * 13 12 10 29 29 H 1.08999 * 110.41133 * 82.17552 * 18 2 1 30 30 H 1.09001 * 110.41003 * 319.73948 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0024 1.3883 0.0000 4 6 3.4433 1.2492 0.5365 5 6 3.4432 -0.0562 1.3584 6 1 4.1483 -0.7709 0.9341 7 6 3.7971 0.2350 2.8183 8 1 3.0627 0.9212 3.2402 9 7 5.1321 0.8442 2.8863 10 6 3.7921 -1.0516 3.6027 11 1 3.5594 -1.9839 3.1095 12 6 4.0836 -1.0386 4.9502 13 7 4.0788 -2.1615 5.6349 14 14 4.4855 0.5738 5.8034 15 1 3.2351 1.1849 6.3212 16 1 5.4160 0.3181 6.9321 17 1 5.1250 1.5003 4.8350 18 6 2.0014 -0.5973 1.2518 19 1 -0.3634 0.5820 0.8470 20 1 -0.3632 0.4426 -0.9276 21 1 -0.3634 -1.0244 0.0805 22 1 1.4106 2.0225 0.6601 23 1 2.0109 1.7941 -1.0116 24 1 3.6937 2.0976 1.1733 25 1 4.1497 1.1758 -0.2904 26 1 5.8312 0.2272 2.5008 27 1 5.1449 1.7400 2.4221 28 1 4.2843 -2.1524 6.5828 29 1 2.0077 -1.6850 1.1812 30 1 1.4097 -0.2746 2.1085 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000208851603.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:51 Heat of formation + Delta-G solvation = -17.211244 kcal Electronic energy + Delta-G solvation = -11712.170666 eV Core-core repulsion = 9734.186642 eV Total energy + Delta-G solvation = -1977.984023 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.12421 -36.55973 -34.04826 -31.94878 -30.12389 -27.78981 -26.42176 -23.30345 -21.99367 -20.63402 -18.90316 -17.09117 -16.62430 -16.16011 -15.95689 -15.21484 -14.81652 -14.51570 -14.03148 -13.62056 -13.41930 -12.91650 -12.62113 -12.41938 -12.33313 -12.20680 -11.72966 -11.69499 -11.25194 -11.03597 -10.68439 -9.48711 -8.77895 -8.20368 -6.31678 1.50778 1.58285 1.94883 2.63255 3.11912 3.21705 3.79639 3.84824 4.11106 4.33852 4.38513 4.46745 4.55887 4.69845 4.78225 4.86776 4.87895 4.96012 5.06246 5.18551 5.22398 5.53191 5.68863 5.87654 6.10322 6.19786 6.57696 6.85588 7.13902 7.46972 8.93330 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053283 B = 0.012858 C = 0.011576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.365325 B = 2177.099622 C = 2418.179820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.531 5.531 3 C 0.034 3.966 4 C -0.117 4.117 5 C -0.104 4.104 6 H 0.055 0.945 7 C 0.203 3.797 8 H 0.027 0.973 9 N -0.841 5.841 10 C -0.517 4.517 11 H 0.027 0.973 12 C 0.019 3.981 13 N -0.956 5.956 14 Si 0.928 3.072 15 H -0.305 1.305 16 H -0.318 1.318 17 H -0.153 1.153 18 C 0.056 3.944 19 H 0.025 0.975 20 H 0.087 0.913 21 H 0.065 0.935 22 H 0.043 0.957 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.335 0.665 27 H 0.330 0.670 28 H 0.259 0.741 29 H 0.055 0.945 30 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 10.055 -11.066 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.255 5.255 3 C -0.094 4.094 4 C -0.155 4.155 5 C -0.126 4.126 6 H 0.073 0.927 7 C 0.093 3.907 8 H 0.045 0.955 9 N -0.372 5.372 10 C -0.555 4.555 11 H 0.045 0.955 12 C -0.179 4.179 13 N -0.597 5.597 14 Si 0.754 3.246 15 H -0.234 1.234 16 H -0.247 1.247 17 H -0.074 1.074 18 C -0.073 4.073 19 H 0.044 0.956 20 H 0.106 0.894 21 H 0.084 0.916 22 H 0.062 0.938 23 H 0.116 0.884 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.148 0.852 27 H 0.144 0.856 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.034 9.698 -10.637 14.710 hybrid contribution -0.375 -0.012 0.716 0.809 sum -3.409 9.685 -9.920 14.277 Atomic orbital electron populations 1.22546 0.87382 1.02091 1.01571 1.65423 1.09074 1.16154 1.34857 1.23194 0.95101 0.89416 1.01653 1.22404 0.96961 0.96871 0.99306 1.22459 0.95776 0.96987 0.97358 0.92653 1.19219 0.88111 0.92768 0.90603 0.95517 1.59683 1.06985 1.07406 1.63108 1.21198 1.47112 0.93398 0.93773 0.95490 1.25955 0.93331 1.00076 0.98491 1.70126 1.51303 1.29652 1.08595 0.86352 0.77359 0.83399 0.77508 1.23375 1.24680 1.07355 1.22830 0.95589 0.98815 0.90031 0.95595 0.89395 0.91637 0.93844 0.88409 0.90443 0.90297 0.85234 0.85627 0.93243 0.92668 0.95175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.53 127.69 1.22 1.54 16 2 N -0.53 -16.38 5.66 -907.16 -5.13 -21.51 16 3 C 0.03 0.89 6.51 86.42 0.56 1.45 16 4 C -0.12 -3.26 6.23 31.49 0.20 -3.07 16 5 C -0.10 -3.88 2.74 -9.90 -0.03 -3.90 16 6 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 7 C 0.20 8.82 1.49 44.17 0.07 8.88 16 8 H 0.03 1.21 7.53 -2.38 -0.02 1.19 16 9 N -0.84 -31.67 5.77 -171.79 -0.99 -32.66 16 10 C -0.52 -29.02 8.83 25.60 0.23 -28.79 16 11 H 0.03 1.70 7.86 -2.91 -0.02 1.67 16 12 C 0.02 1.12 5.47 84.65 0.46 1.59 16 13 N -0.96 -61.66 13.96 21.45 0.30 -61.36 16 14 Si 0.93 45.19 26.94 68.60 1.85 47.04 16 15 H -0.31 -15.08 7.11 99.48 0.71 -14.37 16 16 H -0.32 -16.09 7.11 99.48 0.71 -15.39 16 17 H -0.15 -6.48 5.17 99.48 0.51 -5.97 16 18 C 0.06 2.13 5.42 86.45 0.47 2.59 16 19 H 0.03 0.66 7.98 -2.39 -0.02 0.64 16 20 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.04 1.11 7.91 -2.38 -0.02 1.09 16 23 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.08 1.98 6.52 -2.39 -0.02 1.97 16 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.33 12.44 8.99 -89.70 -0.81 11.63 16 27 H 0.33 9.99 7.44 -89.70 -0.67 9.33 16 28 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 29 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.03 1.24 7.66 -2.39 -0.02 1.22 16 Total: -1.00 -66.81 236.98 -1.35 -68.16 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.55 Total: 20.04 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 3.17 Total: -19.71 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -5.82 Total: -115.53 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.85 Total: 47.04 kcal Total: -66.81 -1.35 -68.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000208851603.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.949 kcal (2) G-P(sol) polarization free energy of solvation -66.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds