Wall clock time and date at job start Mon Mar 30 2020 01:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 H 1.08994 * 109.47315 * 305.55929 * 3 2 1 5 5 C 1.50704 * 109.47107 * 65.56167 * 3 2 1 6 6 H 1.08003 * 119.99645 * 58.53507 * 5 3 2 7 7 C 1.37869 * 119.99811 * 238.54381 * 5 3 2 8 8 N 1.31521 * 119.99817 * 173.61424 * 7 5 3 9 9 Si 1.86803 * 120.00298 * 353.61140 * 7 5 3 10 10 H 1.48496 * 109.46944 * 85.73221 * 9 7 5 11 11 H 1.48505 * 109.47049 * 205.73335 * 9 7 5 12 12 H 1.48493 * 109.46780 * 325.73279 * 9 7 5 13 13 C 1.52996 * 109.46899 * 185.56090 * 3 2 1 14 14 H 1.08997 * 110.55757 * 61.42468 * 13 3 2 15 15 C 1.55226 * 110.77789 * 184.29577 * 13 3 2 16 16 C 1.54811 * 101.99032 * 155.50032 * 15 13 3 17 17 C 1.54100 * 104.30178 * 339.25921 * 16 15 13 18 18 O 1.43740 * 107.29854 * 357.90224 * 17 16 15 19 19 H 1.09004 * 109.46830 * 54.72588 * 1 2 3 20 20 H 1.09006 * 109.47068 * 174.71964 * 1 2 3 21 21 H 1.08998 * 109.47316 * 294.72770 * 1 2 3 22 22 H 1.09002 * 109.47022 * 240.00234 * 2 1 3 23 23 H 1.08999 * 109.46879 * 119.99748 * 2 1 3 24 24 H 0.97000 * 119.99975 * 180.02562 * 8 7 5 25 25 H 1.08994 * 110.89123 * 37.36197 * 15 13 3 26 26 H 1.09001 * 111.01781 * 273.68627 * 15 13 3 27 27 H 1.08991 * 110.48725 * 220.51638 * 16 15 13 28 28 H 1.09004 * 110.48875 * 97.99652 * 16 15 13 29 29 H 1.08998 * 109.88155 * 117.33064 * 17 16 15 30 30 H 1.09000 * 109.88006 * 238.47475 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5977 1.9843 -0.8360 5 6 1.6532 2.1121 1.2936 6 1 1.9826 1.6983 2.2353 7 6 0.8789 3.2526 1.2747 8 7 0.4364 3.7657 2.4020 9 14 0.4582 4.0694 -0.3518 10 1 -0.7509 3.4290 -0.9290 11 1 0.1942 5.5133 -0.1269 12 1 1.5970 3.9149 -1.2922 13 6 3.5636 1.4448 -0.1398 14 1 3.8621 0.9864 -1.0825 15 6 4.1240 2.8886 -0.0352 16 6 5.5762 2.6363 0.4384 17 6 5.5363 1.2237 1.0528 18 8 4.1774 0.7618 0.9745 19 1 -0.3633 0.5935 -0.8390 20 1 -0.3633 -1.0234 -0.0946 21 1 -0.3634 0.4299 0.9334 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 -0.1087 4.5679 2.3888 25 1 3.5694 3.4683 0.7027 26 1 4.1121 3.3839 -1.0060 27 1 5.8655 3.3711 1.1896 28 1 6.2637 2.6654 -0.4070 29 1 6.1878 0.5558 0.4892 30 1 5.8548 1.2634 2.0944 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213689796.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:07 Heat of formation + Delta-G solvation = -84.223335 kcal Electronic energy + Delta-G solvation = -11941.713518 eV Core-core repulsion = 9928.530881 eV Total energy + Delta-G solvation = -2013.182637 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.22802 -36.47795 -33.86065 -32.78432 -30.81316 -27.81070 -25.62900 -23.05931 -21.81074 -20.84127 -19.16783 -17.06223 -16.69875 -16.26575 -15.53314 -15.03636 -14.69384 -14.48214 -14.11247 -13.64271 -13.05034 -12.80300 -12.76449 -12.44265 -12.09433 -12.02221 -11.70277 -11.54818 -11.16943 -11.09666 -10.89992 -10.59245 -10.22454 -8.18168 -6.16071 1.36007 1.37085 1.46303 2.40066 3.12710 3.29100 3.88873 4.06394 4.22980 4.34205 4.37877 4.53275 4.63673 4.69200 4.85153 4.94559 4.99428 5.05509 5.08978 5.17330 5.29091 5.43137 5.51360 5.64865 5.68005 5.83050 6.27075 6.54170 6.89198 7.44803 9.00010 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.034980 B = 0.018725 C = 0.015139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.264943 B = 1494.981405 C = 1849.044269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 C 0.006 3.994 4 H 0.049 0.951 5 C -0.467 4.467 6 H 0.023 0.977 7 C 0.013 3.987 8 N -0.957 5.957 9 Si 0.923 3.077 10 H -0.267 1.267 11 H -0.295 1.295 12 H -0.237 1.237 13 C 0.085 3.915 14 H 0.067 0.933 15 C -0.152 4.152 16 C -0.146 4.146 17 C 0.039 3.961 18 O -0.393 6.393 19 H 0.044 0.956 20 H 0.063 0.937 21 H 0.032 0.968 22 H 0.061 0.939 23 H 0.038 0.962 24 H 0.261 0.739 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.420 -3.120 -8.740 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.140 4.140 3 C -0.013 4.013 4 H 0.067 0.933 5 C -0.505 4.505 6 H 0.041 0.959 7 C -0.182 4.182 8 N -0.599 5.599 9 Si 0.748 3.252 10 H -0.193 1.193 11 H -0.222 1.222 12 H -0.161 1.161 13 C 0.027 3.973 14 H 0.085 0.915 15 C -0.190 4.190 16 C -0.183 4.183 17 C -0.037 4.037 18 O -0.313 6.313 19 H 0.063 0.937 20 H 0.082 0.918 21 H 0.051 0.949 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.227 -3.138 -8.530 11.612 hybrid contribution -0.380 0.850 -0.053 0.933 sum 6.847 -2.288 -8.583 11.215 Atomic orbital electron populations 1.21617 0.96433 1.00559 1.00700 1.21417 0.95594 0.97095 0.99892 1.19447 0.91126 0.94817 0.95914 0.93323 1.20840 1.29021 1.08491 0.92190 0.95864 1.25837 0.95623 0.97789 0.98975 1.70076 1.37851 1.23361 1.28627 0.86105 0.80155 0.77348 0.81579 1.19258 1.22195 1.16091 1.23402 0.95085 0.90625 0.88158 0.91538 1.23186 0.96006 0.98070 1.01730 1.22885 0.96751 0.97113 1.01597 1.23243 0.84459 0.94786 1.01252 1.88877 1.24588 1.65802 1.52054 0.93671 0.91842 0.94872 0.92081 0.94269 0.93048 0.92245 0.90252 0.90950 0.88598 0.90985 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 9.65 71.98 0.69 -4.71 16 2 C -0.10 -4.23 5.20 30.60 0.16 -4.08 16 3 C 0.01 0.26 1.75 -11.54 -0.02 0.24 16 4 H 0.05 2.17 4.75 -2.39 -0.01 2.16 16 5 C -0.47 -26.33 6.15 25.60 0.16 -26.17 16 6 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 7 C 0.01 0.75 5.28 84.65 0.45 1.20 16 8 N -0.96 -60.29 13.96 21.45 0.30 -59.99 16 9 Si 0.92 43.30 26.98 68.60 1.85 45.15 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 12 H -0.24 -9.97 6.75 99.48 0.67 -9.30 16 13 C 0.08 3.42 3.08 31.36 0.10 3.52 16 14 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.15 -5.81 6.49 31.98 0.21 -5.60 16 16 C -0.15 -4.41 7.01 31.58 0.22 -4.19 16 17 C 0.04 1.28 7.70 72.35 0.56 1.84 16 18 O -0.39 -16.85 10.42 -148.98 -1.55 -18.41 16 19 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 20 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 21 H 0.03 1.52 7.57 -2.39 -0.02 1.50 16 22 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.04 1.75 7.94 -2.39 -0.02 1.73 16 24 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.06 2.76 6.60 -2.39 -0.02 2.74 16 26 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -65.64 241.12 4.17 -61.47 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.05 Total: 9.74 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 2.52 Total: -37.95 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.30 Total: -59.99 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.55 Total: -18.41 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.85 Total: 45.15 kcal Total: -65.64 4.17 -61.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213689796.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.756 kcal (2) G-P(sol) polarization free energy of solvation -65.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds