Wall clock time and date at job start Mon Mar 30 2020 01:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46712 * 2 1 4 4 C 1.50690 * 109.46821 * 120.00088 * 2 1 3 5 5 H 1.08002 * 120.00264 * 120.00307 * 4 2 1 6 6 C 1.37878 * 120.00565 * 299.99393 * 4 2 1 7 7 N 1.31522 * 119.99448 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00579 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46864 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47091 * 120.00328 * 8 6 4 11 11 H 1.48494 * 109.47609 * 240.00778 * 8 6 4 12 12 C 1.53000 * 109.47031 * 240.00328 * 2 1 3 13 13 H 1.09000 * 109.48930 * 184.97326 * 12 2 1 14 14 C 1.53090 * 109.48304 * 64.94132 * 12 2 1 15 15 C 1.53176 * 109.16668 * 182.40914 * 14 12 2 16 16 C 1.53181 * 109.03564 * 56.97896 * 15 14 12 17 17 C 1.53096 * 109.16280 * 303.02405 * 16 15 14 18 18 O 1.42902 * 109.47734 * 305.00186 * 12 2 1 19 19 H 1.08995 * 109.47391 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46793 * 300.00118 * 1 2 3 21 21 H 1.09005 * 109.47005 * 59.99310 * 1 2 3 22 22 H 0.97001 * 119.99550 * 179.97438 * 7 6 4 23 23 H 1.09005 * 109.52564 * 302.31806 * 14 12 2 24 24 H 1.08998 * 109.52249 * 62.43969 * 14 12 2 25 25 H 1.09005 * 109.54225 * 297.11519 * 15 14 12 26 26 H 1.08991 * 109.54673 * 176.84737 * 15 14 12 27 27 H 1.08998 * 109.52547 * 183.11606 * 16 15 14 28 28 H 1.09004 * 109.52249 * 62.92485 * 16 15 14 29 29 H 1.08996 * 109.47593 * 177.59033 * 17 16 15 30 30 H 1.09001 * 109.48107 * 297.61277 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8298 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1483 -2.2858 3.6037 10 1 3.1473 -0.1858 4.8161 11 1 1.1679 -1.5867 4.8165 12 6 2.0400 -0.7212 -1.2493 13 1 3.1264 -0.7992 -1.2062 14 6 1.6339 0.0686 -2.4963 15 6 2.0953 -0.6901 -3.7444 16 6 1.4912 -2.0976 -3.7254 17 6 1.9028 -2.8037 -2.4308 18 8 1.4703 -2.0303 -1.3097 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5140 -0.8900 22 1 0.7083 1.1609 3.4844 23 1 0.5500 0.1818 -2.5188 24 1 2.1024 1.0524 -2.4730 25 1 3.1831 -0.7602 -3.7471 26 1 1.7605 -0.1617 -4.6369 27 1 1.8586 -2.6634 -4.5815 28 1 0.4044 -2.0282 -3.7726 29 1 1.4407 -3.7901 -2.3921 30 1 2.9874 -2.9091 -2.4033 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213689935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:18 Heat of formation + Delta-G solvation = -69.370687 kcal Electronic energy + Delta-G solvation = -11807.836113 eV Core-core repulsion = 9795.297536 eV Total energy + Delta-G solvation = -2012.538577 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.73873 -34.18967 -32.98030 -31.40992 -28.41679 -25.11711 -24.28293 -22.93268 -20.26068 -18.97041 -16.11266 -15.48619 -15.05933 -14.51396 -14.05042 -13.90856 -13.24048 -12.28929 -12.04276 -11.96682 -11.61035 -10.96753 -10.87540 -10.85681 -10.44620 -10.35129 -10.06067 -9.98424 -9.73158 -8.94169 -8.82466 -8.44687 -8.23887 -5.87774 -3.91705 3.36644 3.44138 3.49470 4.53240 4.66545 5.19646 5.25172 5.32662 5.44432 5.63177 5.77444 5.92700 6.05301 6.15685 6.29929 6.34268 6.39622 6.48059 6.83148 6.84642 7.06309 7.32456 7.47895 7.80359 8.01318 8.24412 8.28300 8.59437 9.10249 9.71156 11.18469 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.064173 B = 0.011843 C = 0.010816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.216742 B = 2363.607673 C = 2588.215827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.049 3.951 3 H 0.036 0.964 4 C -0.497 4.497 5 H 0.056 0.944 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.890 3.110 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.101 3.899 13 H 0.041 0.959 14 C -0.154 4.154 15 C -0.121 4.121 16 C -0.154 4.154 17 C 0.056 3.944 18 O -0.358 6.358 19 H 0.033 0.967 20 H 0.078 0.922 21 H 0.005 0.995 22 H 0.257 0.743 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.465 -3.261 -9.684 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.031 3.969 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.075 0.925 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.719 3.281 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.212 1.212 12 C 0.044 3.956 13 H 0.059 0.941 14 C -0.191 4.191 15 C -0.159 4.159 16 C -0.191 4.191 17 C -0.022 4.022 18 O -0.277 6.277 19 H 0.053 0.947 20 H 0.096 0.904 21 H 0.024 0.976 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.261 -3.216 -9.402 10.016 hybrid contribution 0.493 -0.360 0.570 0.835 sum 1.754 -3.576 -8.832 9.688 Atomic orbital electron populations 1.21715 0.98218 0.99529 0.99419 1.18755 0.93574 0.94719 0.89826 0.94625 1.21181 1.30319 1.11773 0.90318 0.92549 1.24957 0.95363 0.95106 0.98911 1.69909 1.37347 1.23267 1.22951 0.86556 0.78577 0.79694 0.83283 1.19857 1.21251 1.21154 1.22380 0.95659 0.82067 0.95487 0.94139 1.22323 1.02282 0.99245 0.95281 1.21596 1.00063 0.95827 0.98385 1.22178 1.01530 0.96905 0.98531 1.22440 0.98201 0.94910 0.86603 1.88106 1.69211 1.26694 1.43655 0.94745 0.90372 0.97617 0.93282 0.91090 0.91658 0.92458 0.92506 0.92050 0.91467 0.90066 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.53 37.16 0.32 -3.03 16 2 C 0.05 1.28 2.14 -91.77 -0.20 1.09 16 3 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.50 -14.23 8.33 -34.44 -0.29 -14.52 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -26.34 11.32 55.43 0.63 -25.71 16 8 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 C 0.10 2.22 2.27 -26.68 -0.06 2.16 16 13 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.15 -2.79 5.22 -26.59 -0.14 -2.92 16 15 C -0.12 -1.80 6.03 -26.55 -0.16 -1.96 16 16 C -0.15 -2.21 6.14 -26.59 -0.16 -2.37 16 17 C 0.06 0.94 6.84 37.21 0.25 1.19 16 18 O -0.36 -7.86 9.28 -35.23 -0.33 -8.18 16 19 H 0.03 0.88 7.56 -51.93 -0.39 0.49 16 20 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 21 H 0.00 0.11 6.52 -51.93 -0.34 -0.23 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.07 1.33 6.46 -51.93 -0.34 1.00 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 238.19 15.07 3.59 3.59 Total: -1.00 -29.77 238.19 -6.39 -36.16 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -4.73 Total: -4.06 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.53 Total: -18.84 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.63 Total: -25.71 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.33 Total: -8.18 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.77 -6.39 -36.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213689935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.215 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds