Wall clock time and date at job start Mon Mar 30 2020 01:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46712 * 2 1 4 4 C 1.50690 * 109.46821 * 120.00088 * 2 1 3 5 5 H 1.08002 * 120.00264 * 120.00307 * 4 2 1 6 6 C 1.37878 * 120.00565 * 299.99393 * 4 2 1 7 7 N 1.31522 * 119.99448 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00579 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46864 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47091 * 120.00328 * 8 6 4 11 11 H 1.48494 * 109.47609 * 240.00778 * 8 6 4 12 12 C 1.53000 * 109.47031 * 240.00328 * 2 1 3 13 13 H 1.09000 * 109.48930 * 184.97326 * 12 2 1 14 14 C 1.53090 * 109.48304 * 64.94132 * 12 2 1 15 15 C 1.53176 * 109.16668 * 182.40914 * 14 12 2 16 16 C 1.53181 * 109.03564 * 56.97896 * 15 14 12 17 17 C 1.53096 * 109.16280 * 303.02405 * 16 15 14 18 18 O 1.42902 * 109.47734 * 305.00186 * 12 2 1 19 19 H 1.08995 * 109.47391 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46793 * 300.00118 * 1 2 3 21 21 H 1.09005 * 109.47005 * 59.99310 * 1 2 3 22 22 H 0.97001 * 119.99550 * 179.97438 * 7 6 4 23 23 H 1.09005 * 109.52564 * 302.31806 * 14 12 2 24 24 H 1.08998 * 109.52249 * 62.43969 * 14 12 2 25 25 H 1.09005 * 109.54225 * 297.11519 * 15 14 12 26 26 H 1.08991 * 109.54673 * 176.84737 * 15 14 12 27 27 H 1.08998 * 109.52547 * 183.11606 * 16 15 14 28 28 H 1.09004 * 109.52249 * 62.92485 * 16 15 14 29 29 H 1.08996 * 109.47593 * 177.59033 * 17 16 15 30 30 H 1.09001 * 109.48107 * 297.61277 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8298 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1483 -2.2858 3.6037 10 1 3.1473 -0.1858 4.8161 11 1 1.1679 -1.5867 4.8165 12 6 2.0400 -0.7212 -1.2493 13 1 3.1264 -0.7992 -1.2062 14 6 1.6339 0.0686 -2.4963 15 6 2.0953 -0.6901 -3.7444 16 6 1.4912 -2.0976 -3.7254 17 6 1.9028 -2.8037 -2.4308 18 8 1.4703 -2.0303 -1.3097 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5140 -0.8900 22 1 0.7083 1.1609 3.4844 23 1 0.5500 0.1818 -2.5188 24 1 2.1024 1.0524 -2.4730 25 1 3.1831 -0.7602 -3.7471 26 1 1.7605 -0.1617 -4.6369 27 1 1.8586 -2.6634 -4.5815 28 1 0.4044 -2.0282 -3.7726 29 1 1.4407 -3.7901 -2.3921 30 1 2.9874 -2.9091 -2.4033 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213689935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:18 Heat of formation + Delta-G solvation = -87.454349 kcal Electronic energy + Delta-G solvation = -11808.620280 eV Core-core repulsion = 9795.297536 eV Total energy + Delta-G solvation = -2013.322744 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.26478 -36.14540 -34.36922 -33.34344 -30.09155 -27.27648 -25.83042 -24.44816 -21.85013 -20.60597 -18.26374 -17.03371 -16.78896 -16.27658 -15.44277 -15.33303 -14.95923 -14.10633 -13.74413 -13.49811 -13.38300 -12.84400 -12.58542 -12.48429 -12.15389 -12.05239 -11.92580 -11.70830 -11.27092 -10.85229 -10.72298 -10.44413 -10.04737 -8.06170 -6.17924 1.39796 1.41362 1.53482 2.45282 3.12826 3.26861 3.99970 4.02707 4.08368 4.23947 4.40731 4.61542 4.69353 4.84906 4.93057 4.96042 5.01895 5.13407 5.16501 5.19727 5.36489 5.38238 5.52873 5.62178 5.91207 6.14595 6.39169 6.71475 6.90370 7.48315 8.98860 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.064173 B = 0.011843 C = 0.010816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.216742 B = 2363.607673 C = 2588.215827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.042 3.958 3 H 0.013 0.987 4 C -0.518 4.518 5 H 0.046 0.954 6 C 0.008 3.992 7 N -0.920 5.920 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.281 1.281 12 C 0.108 3.892 13 H 0.032 0.968 14 C -0.149 4.149 15 C -0.117 4.117 16 C -0.148 4.148 17 C 0.045 3.955 18 O -0.392 6.392 19 H 0.023 0.977 20 H 0.050 0.950 21 H 0.029 0.971 22 H 0.260 0.740 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 -4.054 -10.894 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.024 3.976 3 H 0.031 0.969 4 C -0.556 4.556 5 H 0.064 0.936 6 C -0.190 4.190 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.203 1.203 11 H -0.207 1.207 12 C 0.050 3.950 13 H 0.050 0.950 14 C -0.187 4.187 15 C -0.155 4.155 16 C -0.185 4.185 17 C -0.032 4.032 18 O -0.312 6.312 19 H 0.042 0.958 20 H 0.069 0.931 21 H 0.048 0.952 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.683 -4.013 -10.626 11.482 hybrid contribution 0.362 -0.137 0.929 1.006 sum 2.045 -4.150 -9.697 10.744 Atomic orbital electron populations 1.21506 0.98061 0.98602 0.99195 1.18722 0.93680 0.93843 0.91393 0.96934 1.21458 1.30530 1.11722 0.91894 0.93608 1.25734 0.95555 0.95855 1.01849 1.70028 1.38025 1.24300 1.23709 0.85565 0.78152 0.78698 0.79593 1.19504 1.20334 1.20678 1.22076 0.94842 0.82751 0.95296 0.94983 1.22236 1.01793 0.99388 0.95278 1.21601 1.00639 0.95872 0.97341 1.22146 1.01420 0.96712 0.98240 1.22768 0.98858 0.95262 0.86290 1.88024 1.69762 1.26880 1.46494 0.95801 0.93082 0.95229 0.93101 0.91871 0.91293 0.91627 0.89870 0.88610 0.91770 0.88400 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.53 71.98 0.61 -5.39 16 2 C 0.04 2.22 2.14 -11.54 -0.02 2.19 16 3 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.52 -30.17 8.33 25.60 0.21 -29.96 16 5 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 6 C 0.01 0.44 5.30 84.65 0.45 0.89 16 7 N -0.92 -55.00 11.32 21.45 0.24 -54.76 16 8 Si 0.95 45.57 29.54 68.60 2.03 47.59 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 C 0.11 4.70 2.27 30.62 0.07 4.77 16 13 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 14 C -0.15 -5.20 5.22 30.68 0.16 -5.04 16 15 C -0.12 -3.09 6.03 30.71 0.19 -2.91 16 16 C -0.15 -3.73 6.14 30.69 0.19 -3.55 16 17 C 0.04 1.40 6.84 72.01 0.49 1.90 16 18 O -0.39 -17.00 9.28 -148.98 -1.38 -18.38 16 19 H 0.02 1.23 7.56 -2.39 -0.02 1.21 16 20 H 0.05 2.90 6.07 -2.39 -0.01 2.88 16 21 H 0.03 1.33 6.52 -2.38 -0.02 1.32 16 22 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 23 H 0.06 2.28 6.46 -2.38 -0.02 2.26 16 24 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -63.97 238.19 4.32 -59.65 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.09 Total: 2.99 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 2.35 Total: -37.09 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.24 Total: -54.76 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.38 Total: -18.38 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -63.97 4.32 -59.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213689935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.809 kcal (2) G-P(sol) polarization free energy of solvation -63.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds