Wall clock time and date at job start Mon Mar 30 2020 01:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47230 * 2 1 4 4 C 1.50704 * 109.47078 * 119.99925 * 2 1 3 5 5 H 1.08003 * 120.00219 * 119.99815 * 4 2 1 6 6 C 1.37872 * 120.00028 * 300.00244 * 4 2 1 7 7 N 1.31520 * 120.00264 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00183 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47101 * 59.99361 * 8 6 4 10 10 H 1.48496 * 109.47394 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46751 * 299.99557 * 8 6 4 12 12 C 1.52998 * 109.47394 * 239.99584 * 2 1 3 13 13 H 1.08998 * 109.48295 * 299.98391 * 12 2 1 14 14 C 1.53098 * 109.47586 * 60.00394 * 12 2 1 15 15 C 1.53177 * 109.21356 * 177.55854 * 14 12 2 16 16 C 1.53180 * 109.03525 * 303.11207 * 15 14 12 17 17 C 1.53097 * 109.21119 * 56.88485 * 16 15 14 18 18 O 1.42898 * 109.41405 * 302.42599 * 17 16 15 19 19 H 1.09003 * 109.47278 * 299.99964 * 1 2 3 20 20 H 1.08997 * 109.46755 * 59.99859 * 1 2 3 21 21 H 1.08994 * 109.47429 * 180.02562 * 1 2 3 22 22 H 0.97000 * 120.00399 * 180.02562 * 7 6 4 23 23 H 1.09002 * 109.52244 * 297.49793 * 14 12 2 24 24 H 1.09004 * 109.52508 * 57.62322 * 14 12 2 25 25 H 1.09005 * 109.54330 * 62.92184 * 15 14 12 26 26 H 1.09005 * 109.54560 * 183.18386 * 15 14 12 27 27 H 1.09002 * 109.46996 * 296.98297 * 16 15 14 28 28 H 1.09005 * 109.58122 * 176.85328 * 16 15 14 29 29 H 1.09007 * 109.47760 * 182.43925 * 17 16 15 30 30 H 1.09003 * 109.48798 * 62.41590 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.8063 -1.1211 4.0082 10 1 1.8268 -0.4200 5.2205 11 1 1.8256 -2.5202 4.0078 12 6 2.0400 -0.7213 -1.2491 13 1 1.6771 -1.7491 -1.2491 14 6 1.5299 0.0003 -2.4993 15 6 2.0935 -0.6901 -3.7451 16 6 3.6230 -0.7003 -3.6617 17 6 4.0523 -1.3948 -2.3666 18 8 3.4690 -0.7202 -1.2501 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 0.7094 1.1618 3.4844 23 1 0.4408 -0.0379 -2.5230 24 1 1.8576 1.0397 -2.4793 25 1 1.7249 -1.7149 -3.7924 26 1 1.7797 -0.1469 -4.6366 27 1 3.9939 0.3246 -3.6656 28 1 4.0319 -1.2389 -4.5167 29 1 5.1387 -1.3662 -2.2817 30 1 3.7160 -2.4315 -2.3812 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213690049.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:24 Heat of formation + Delta-G solvation = -69.960597 kcal Electronic energy + Delta-G solvation = -11752.134776 eV Core-core repulsion = 9739.570618 eV Total energy + Delta-G solvation = -2012.564158 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.71265 -34.29046 -33.01554 -31.43670 -28.49842 -25.16979 -24.01635 -23.02036 -20.04389 -19.26762 -16.08847 -15.49495 -15.39407 -14.41466 -14.06576 -13.80184 -13.10286 -12.45258 -12.21668 -11.98776 -11.43168 -10.91658 -10.78829 -10.77078 -10.57087 -10.37422 -10.15606 -10.06277 -9.80992 -9.00965 -8.90595 -8.44925 -8.21620 -5.87210 -3.90771 3.40171 3.43638 3.47610 4.53961 4.64331 5.19097 5.24935 5.32077 5.45553 5.62685 5.76701 5.92575 6.04489 6.14804 6.30145 6.33706 6.38906 6.48366 6.80734 6.81628 6.97722 7.12711 7.34779 7.82901 7.90240 8.15113 8.35066 8.57421 9.11362 9.71926 11.19412 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.059143 B = 0.012124 C = 0.010547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.315403 B = 2308.846802 C = 2654.041885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.050 3.950 3 H 0.032 0.968 4 C -0.497 4.497 5 H 0.056 0.944 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.279 1.279 12 C 0.102 3.898 13 H 0.041 0.959 14 C -0.153 4.153 15 C -0.122 4.122 16 C -0.154 4.154 17 C 0.057 3.943 18 O -0.362 6.362 19 H 0.086 0.914 20 H 0.012 0.988 21 H 0.025 0.975 22 H 0.258 0.742 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 -2.853 -9.650 10.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.031 3.969 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.074 0.926 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.720 3.280 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.205 1.205 12 C 0.044 3.956 13 H 0.059 0.941 14 C -0.190 4.190 15 C -0.159 4.159 16 C -0.192 4.192 17 C -0.021 4.021 18 O -0.280 6.280 19 H 0.105 0.895 20 H 0.030 0.970 21 H 0.044 0.956 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.985 -2.648 -9.355 9.923 hybrid contribution 0.185 -0.597 0.552 0.834 sum 2.171 -3.245 -8.803 9.630 Atomic orbital electron populations 1.21825 0.97924 0.99075 1.00491 1.18693 0.92123 0.96148 0.89893 0.94994 1.21090 1.30003 1.12145 0.90259 0.92567 1.24951 0.95352 0.95124 0.98888 1.69875 1.37436 1.23172 1.23179 0.86668 0.79268 0.79653 0.82440 1.20331 1.21464 1.20460 1.22391 0.79583 0.97986 0.95604 0.94067 1.22327 1.00934 1.00528 0.95234 1.21604 0.95334 1.00592 0.98382 1.22186 0.96701 1.01791 0.98530 1.22441 0.98049 0.94954 0.86657 1.88105 1.20787 1.76369 1.42776 0.89506 0.96953 0.95574 0.93165 0.91097 0.91668 0.92428 0.92460 0.91467 0.92008 0.90015 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.62 37.16 0.32 -2.98 16 2 C 0.05 1.30 2.11 -91.77 -0.19 1.11 16 3 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.50 -14.28 8.23 -34.44 -0.28 -14.56 16 5 H 0.06 1.63 7.70 -52.48 -0.40 1.22 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -26.41 11.32 55.43 0.63 -25.78 16 8 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 C 0.10 2.24 2.17 -26.68 -0.06 2.18 16 13 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.15 -2.78 4.99 -26.59 -0.13 -2.91 16 15 C -0.12 -1.81 6.03 -26.55 -0.16 -1.97 16 16 C -0.15 -2.23 6.13 -26.59 -0.16 -2.39 16 17 C 0.06 0.95 6.84 37.21 0.25 1.21 16 18 O -0.36 -8.08 10.00 -35.23 -0.35 -8.43 16 19 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 20 H 0.01 0.25 6.49 -51.93 -0.34 -0.09 16 21 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 23 H 0.07 1.24 6.57 -51.93 -0.34 0.90 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 239.15 15.07 3.60 3.60 Total: -1.00 -29.87 239.15 -6.41 -36.28 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -4.76 Total: -3.99 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -0.51 Total: -18.78 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.63 Total: -25.78 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.35 Total: -8.43 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.87 -6.41 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213690049.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.677 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds