Wall clock time and date at job start Mon Mar 30 2020 01:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47230 * 2 1 4 4 C 1.50704 * 109.47078 * 119.99925 * 2 1 3 5 5 H 1.08003 * 120.00219 * 119.99815 * 4 2 1 6 6 C 1.37872 * 120.00028 * 300.00244 * 4 2 1 7 7 N 1.31520 * 120.00264 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00183 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47101 * 59.99361 * 8 6 4 10 10 H 1.48496 * 109.47394 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46751 * 299.99557 * 8 6 4 12 12 C 1.52998 * 109.47394 * 239.99584 * 2 1 3 13 13 H 1.08998 * 109.48295 * 299.98391 * 12 2 1 14 14 C 1.53098 * 109.47586 * 60.00394 * 12 2 1 15 15 C 1.53177 * 109.21356 * 177.55854 * 14 12 2 16 16 C 1.53180 * 109.03525 * 303.11207 * 15 14 12 17 17 C 1.53097 * 109.21119 * 56.88485 * 16 15 14 18 18 O 1.42898 * 109.41405 * 302.42599 * 17 16 15 19 19 H 1.09003 * 109.47278 * 299.99964 * 1 2 3 20 20 H 1.08997 * 109.46755 * 59.99859 * 1 2 3 21 21 H 1.08994 * 109.47429 * 180.02562 * 1 2 3 22 22 H 0.97000 * 120.00399 * 180.02562 * 7 6 4 23 23 H 1.09002 * 109.52244 * 297.49793 * 14 12 2 24 24 H 1.09004 * 109.52508 * 57.62322 * 14 12 2 25 25 H 1.09005 * 109.54330 * 62.92184 * 15 14 12 26 26 H 1.09005 * 109.54560 * 183.18386 * 15 14 12 27 27 H 1.09002 * 109.46996 * 296.98297 * 16 15 14 28 28 H 1.09005 * 109.58122 * 176.85328 * 16 15 14 29 29 H 1.09007 * 109.47760 * 182.43925 * 17 16 15 30 30 H 1.09003 * 109.48798 * 62.41590 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.8063 -1.1211 4.0082 10 1 1.8268 -0.4200 5.2205 11 1 1.8256 -2.5202 4.0078 12 6 2.0400 -0.7213 -1.2491 13 1 1.6771 -1.7491 -1.2491 14 6 1.5299 0.0003 -2.4993 15 6 2.0935 -0.6901 -3.7451 16 6 3.6230 -0.7003 -3.6617 17 6 4.0523 -1.3948 -2.3666 18 8 3.4690 -0.7202 -1.2501 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 0.7094 1.1618 3.4844 23 1 0.4408 -0.0379 -2.5230 24 1 1.8576 1.0397 -2.4793 25 1 1.7249 -1.7149 -3.7924 26 1 1.7797 -0.1469 -4.6366 27 1 3.9939 0.3246 -3.6656 28 1 4.0319 -1.2389 -4.5167 29 1 5.1387 -1.3662 -2.2817 30 1 3.7160 -2.4315 -2.3812 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213690049.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:23 Heat of formation + Delta-G solvation = -88.381208 kcal Electronic energy + Delta-G solvation = -11752.933554 eV Core-core repulsion = 9739.570618 eV Total energy + Delta-G solvation = -2013.362936 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.24463 -36.24505 -34.42137 -33.38176 -30.14451 -27.27540 -25.56602 -24.56361 -21.62636 -20.93796 -18.25216 -17.15340 -16.90739 -16.33907 -15.43804 -15.19011 -14.83931 -14.19281 -13.83620 -13.48492 -13.30325 -12.82079 -12.70223 -12.33554 -12.22788 -12.02136 -11.92150 -11.80320 -11.32727 -10.89869 -10.81927 -10.39238 -10.07568 -8.05928 -6.17729 1.40643 1.43168 1.50693 2.45519 3.10076 3.27091 3.99044 4.01480 4.07322 4.22859 4.38658 4.60590 4.66098 4.81759 4.91566 4.95699 5.04667 5.08941 5.15536 5.15921 5.24521 5.41997 5.45622 5.64280 5.90783 6.06917 6.39881 6.70834 6.91216 7.48518 8.98971 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.059143 B = 0.012124 C = 0.010547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.315403 B = 2308.846802 C = 2654.041885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.044 3.956 3 H -0.007 1.007 4 C -0.519 4.519 5 H 0.046 0.954 6 C 0.008 3.992 7 N -0.921 5.921 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.270 1.270 12 C 0.107 3.893 13 H 0.037 0.963 14 C -0.148 4.148 15 C -0.118 4.118 16 C -0.149 4.149 17 C 0.045 3.955 18 O -0.401 6.401 19 H 0.057 0.943 20 H 0.040 0.960 21 H 0.030 0.970 22 H 0.260 0.740 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 -3.798 -10.910 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.025 3.975 3 H 0.011 0.989 4 C -0.557 4.557 5 H 0.064 0.936 6 C -0.190 4.190 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.195 1.195 12 C 0.050 3.950 13 H 0.055 0.945 14 C -0.186 4.186 15 C -0.155 4.155 16 C -0.186 4.186 17 C -0.031 4.031 18 O -0.321 6.321 19 H 0.076 0.924 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.096 0.904 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.282 -3.600 -10.631 11.453 hybrid contribution 0.139 -0.296 0.928 0.984 sum 2.421 -3.896 -9.703 10.733 Atomic orbital electron populations 1.21637 0.96840 0.99254 1.00451 1.18675 0.93156 0.94169 0.91476 0.98851 1.21389 1.30219 1.12198 0.91880 0.93584 1.25736 0.95526 0.95884 1.01845 1.70008 1.38094 1.24195 1.23845 0.85678 0.78607 0.78899 0.78861 1.20166 1.20677 1.19469 1.22126 0.80022 0.97452 0.95409 0.94497 1.22239 1.01353 0.99760 0.95214 1.21613 0.95457 1.01096 0.97325 1.22158 0.96505 1.01736 0.98239 1.22776 0.98771 0.95232 0.86362 1.88023 1.20780 1.77462 1.45788 0.92374 0.94100 0.95101 0.93080 0.90431 0.92792 0.91404 0.89765 0.91929 0.88459 0.88441 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.09 8.62 71.98 0.62 -5.47 16 2 C 0.04 2.33 2.11 -11.54 -0.02 2.31 16 3 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 4 C -0.52 -30.44 8.23 25.60 0.21 -30.23 16 5 H 0.05 2.72 7.70 -2.91 -0.02 2.70 16 6 C 0.01 0.44 5.30 84.65 0.45 0.89 16 7 N -0.92 -55.27 11.32 21.45 0.24 -55.02 16 8 Si 0.95 45.70 29.54 68.60 2.03 47.72 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 12 C 0.11 4.72 2.17 30.63 0.07 4.78 16 13 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 14 C -0.15 -5.18 4.99 30.69 0.15 -5.03 16 15 C -0.12 -3.11 6.03 30.71 0.19 -2.92 16 16 C -0.15 -3.82 6.13 30.69 0.19 -3.63 16 17 C 0.05 1.44 6.84 72.01 0.49 1.93 16 18 O -0.40 -17.91 10.00 -148.98 -1.49 -19.40 16 19 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 20 H 0.04 1.71 6.49 -2.39 -0.02 1.70 16 21 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 23 H 0.08 2.56 6.57 -2.39 -0.02 2.55 16 24 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.94 239.15 4.21 -60.73 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 1.09 Total: 3.34 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 2.34 Total: -37.37 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.24 Total: -55.02 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -1.49 Total: -19.40 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -64.94 4.21 -60.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213690049.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.649 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds