Wall clock time and date at job start Mon Mar 30 2020 02:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.48972 * 2 1 4 4 C 1.53056 * 109.49080 * 239.95444 * 2 1 3 5 5 N 1.46953 * 109.36257 * 298.41034 * 4 2 1 6 6 C 1.46954 * 110.88660 * 300.68057 * 5 4 2 7 7 H 1.09005 * 109.48558 * 299.33248 * 6 5 4 8 8 C 1.50694 * 109.49346 * 179.28690 * 6 5 4 9 9 H 1.08000 * 120.00563 * 240.04181 * 8 6 5 10 10 C 1.37885 * 119.99902 * 60.04344 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.53054 * 109.38098 * 59.30472 * 6 5 4 17 17 N 1.46955 * 109.36522 * 301.63803 * 16 6 5 18 18 C 1.46898 * 110.99814 * 183.16563 * 17 16 6 19 19 H 1.09005 * 109.47089 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47180 * 300.04693 * 1 2 3 21 21 H 1.09002 * 109.47069 * 60.04659 * 1 2 3 22 22 H 1.08998 * 109.48858 * 178.44258 * 4 2 1 23 23 H 1.08999 * 109.50494 * 58.38987 * 4 2 1 24 24 H 1.00907 * 110.99992 * 176.80709 * 5 4 2 25 25 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 26 26 H 1.09000 * 109.48551 * 61.58698 * 16 6 5 27 27 H 1.09003 * 109.48661 * 181.64495 * 16 6 5 28 28 H 1.08999 * 109.47257 * 296.17872 * 18 17 16 29 29 H 1.09003 * 109.47227 * 56.17653 * 18 17 16 30 30 H 1.08995 * 109.47225 * 176.17749 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2490 5 7 1.5814 -2.1182 -1.2265 6 6 2.0720 -2.8119 -0.0275 7 1 3.1620 -2.8119 -0.0279 8 6 1.5692 -4.2325 -0.0275 9 1 0.9485 -4.5857 0.7827 10 6 1.9017 -5.0815 -1.0618 11 7 2.6572 -4.6514 -2.0486 12 14 1.2791 -6.8427 -1.0613 13 1 2.2577 -7.7136 -0.3619 14 1 -0.0286 -6.9052 -0.3604 15 1 1.1132 -7.3094 -2.4613 16 6 1.5619 -2.0896 1.2217 17 7 2.0207 -0.6937 1.1990 18 6 1.6139 0.0141 2.4202 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5145 0.8895 21 1 -0.3633 0.5131 -0.8904 22 1 3.1303 -0.6983 -1.2630 23 1 1.6544 -0.2267 -2.1396 24 1 1.8608 -2.6043 -2.0654 25 1 2.8914 -5.2488 -2.7760 26 1 0.4722 -2.1138 1.2362 27 1 1.9487 -2.5856 2.1119 28 1 0.5260 0.0639 2.4659 29 1 1.9900 -0.5206 3.2925 30 1 2.0236 1.0240 2.4085 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218601935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:30 Heat of formation + Delta-G solvation = 5.663570 kcal Electronic energy + Delta-G solvation = -11942.782906 eV Core-core repulsion = 9965.790809 eV Total energy + Delta-G solvation = -1976.992097 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.57717 -34.04934 -32.17469 -30.67250 -27.80079 -25.90578 -24.60237 -22.55056 -21.07381 -17.67113 -16.55937 -15.59843 -14.58617 -14.54030 -13.63376 -13.54793 -13.27398 -12.88640 -12.19760 -11.82861 -11.55319 -11.41373 -11.08434 -10.95021 -10.69967 -10.44425 -10.31586 -9.81962 -9.38355 -9.05020 -8.56861 -7.61556 -6.79688 -6.07816 -4.10534 3.30656 3.37290 3.41207 4.39997 4.69048 5.18643 5.55350 5.63205 5.70295 5.84592 5.94481 6.09419 6.17817 6.29091 6.32354 6.45121 6.54160 6.58250 6.72677 6.92538 7.05389 7.50741 7.76622 7.78291 7.94016 8.24245 8.69144 9.01478 9.15449 9.57206 11.02902 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062417 B = 0.012557 C = 0.011586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.489079 B = 2229.279274 C = 2416.232389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.065 0.935 4 C 0.060 3.940 5 N -0.683 5.683 6 C 0.219 3.781 7 H 0.003 0.997 8 C -0.505 4.505 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.900 5.900 12 Si 0.899 3.101 13 H -0.281 1.281 14 H -0.274 1.274 15 H -0.286 1.286 16 C 0.065 3.935 17 N -0.543 5.543 18 C 0.024 3.976 19 H 0.078 0.922 20 H 0.039 0.961 21 H 0.050 0.950 22 H 0.019 0.981 23 H 0.055 0.945 24 H 0.362 0.638 25 H 0.264 0.736 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.022 0.978 29 H 0.060 0.940 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 6.794 3.446 7.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 H 0.083 0.917 4 C -0.070 4.070 5 N -0.320 5.320 6 C 0.111 3.889 7 H 0.021 0.979 8 C -0.544 4.544 9 H 0.077 0.923 10 C -0.134 4.134 11 N -0.541 5.541 12 Si 0.727 3.273 13 H -0.208 1.208 14 H -0.199 1.199 15 H -0.212 1.212 16 C -0.062 4.062 17 N -0.267 5.267 18 C -0.125 4.125 19 H 0.097 0.903 20 H 0.058 0.942 21 H 0.069 0.931 22 H 0.038 0.962 23 H 0.074 0.926 24 H 0.186 0.814 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.308 6.872 3.534 8.065 hybrid contribution -0.228 -0.981 -0.254 1.038 sum -2.537 5.892 3.280 7.204 Atomic orbital electron populations 1.22293 0.97598 1.03432 0.99924 1.21680 0.93093 0.96435 0.91097 0.91659 1.21858 0.96657 0.93486 0.95043 1.60965 1.62601 0.99772 1.08672 1.19018 0.93527 0.91152 0.85188 0.97949 1.21122 1.31671 0.94564 1.07073 0.92292 1.24979 0.94387 0.98737 0.95346 1.69682 1.37153 1.36306 1.10916 0.86484 0.79212 0.84407 0.77170 1.20764 1.19883 1.21229 1.22357 0.97652 0.86013 1.00208 1.62423 1.59379 1.03579 1.01272 1.22329 0.98029 0.98627 0.93472 0.90345 0.94243 0.93098 0.96249 0.92611 0.81377 0.92654 0.94866 0.92195 0.95937 0.92129 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.37 37.16 0.31 -2.74 16 2 C 0.09 1.61 2.97 -67.65 -0.20 1.41 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.06 1.26 6.15 -3.77 -0.02 1.24 16 5 N -0.68 -16.80 5.85 -107.81 -0.63 -17.43 16 6 C 0.22 5.69 2.55 -68.81 -0.18 5.52 16 7 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 8 C -0.50 -14.01 8.76 -34.44 -0.30 -14.31 16 9 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 10 C 0.07 1.85 5.35 -17.82 -0.10 1.75 16 11 N -0.90 -25.49 11.49 55.43 0.64 -24.85 16 12 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 16 C 0.07 1.46 4.46 -3.77 -0.02 1.44 16 17 N -0.54 -10.72 4.92 -234.73 -1.15 -11.88 16 18 C 0.02 0.38 9.28 60.06 0.56 0.94 16 19 H 0.08 1.60 5.95 -51.93 -0.31 1.29 16 20 H 0.04 0.62 6.48 -51.93 -0.34 0.28 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.36 9.65 6.72 -39.29 -0.26 9.38 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.03 0.75 6.35 -51.93 -0.33 0.42 16 27 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 28 H 0.02 0.34 6.39 -51.93 -0.33 0.01 16 29 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 234.05 15.07 3.53 3.53 Total: -1.00 -28.13 234.05 -7.08 -35.21 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.49 Total: 3.88 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 0.06 Total: -4.74 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -1.15 Total: -54.16 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.13 -7.08 -35.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218601935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.870 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds