Wall clock time and date at job start Mon Mar 30 2020 02:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.48972 * 2 1 4 4 C 1.53056 * 109.49080 * 239.95444 * 2 1 3 5 5 N 1.46953 * 109.36257 * 298.41034 * 4 2 1 6 6 C 1.46954 * 110.88660 * 300.68057 * 5 4 2 7 7 H 1.09005 * 109.48558 * 299.33248 * 6 5 4 8 8 C 1.50694 * 109.49346 * 179.28690 * 6 5 4 9 9 H 1.08000 * 120.00563 * 240.04181 * 8 6 5 10 10 C 1.37885 * 119.99902 * 60.04344 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.53054 * 109.38098 * 59.30472 * 6 5 4 17 17 N 1.46955 * 109.36522 * 301.63803 * 16 6 5 18 18 C 1.46898 * 110.99814 * 183.16563 * 17 16 6 19 19 H 1.09005 * 109.47089 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47180 * 300.04693 * 1 2 3 21 21 H 1.09002 * 109.47069 * 60.04659 * 1 2 3 22 22 H 1.08998 * 109.48858 * 178.44258 * 4 2 1 23 23 H 1.08999 * 109.50494 * 58.38987 * 4 2 1 24 24 H 1.00907 * 110.99992 * 176.80709 * 5 4 2 25 25 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 26 26 H 1.09000 * 109.48551 * 61.58698 * 16 6 5 27 27 H 1.09003 * 109.48661 * 181.64495 * 16 6 5 28 28 H 1.08999 * 109.47257 * 296.17872 * 18 17 16 29 29 H 1.09003 * 109.47227 * 56.17653 * 18 17 16 30 30 H 1.08995 * 109.47225 * 176.17749 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2490 5 7 1.5814 -2.1182 -1.2265 6 6 2.0720 -2.8119 -0.0275 7 1 3.1620 -2.8119 -0.0279 8 6 1.5692 -4.2325 -0.0275 9 1 0.9485 -4.5857 0.7827 10 6 1.9017 -5.0815 -1.0618 11 7 2.6572 -4.6514 -2.0486 12 14 1.2791 -6.8427 -1.0613 13 1 2.2577 -7.7136 -0.3619 14 1 -0.0286 -6.9052 -0.3604 15 1 1.1132 -7.3094 -2.4613 16 6 1.5619 -2.0896 1.2217 17 7 2.0207 -0.6937 1.1990 18 6 1.6139 0.0141 2.4202 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5145 0.8895 21 1 -0.3633 0.5131 -0.8904 22 1 3.1303 -0.6983 -1.2630 23 1 1.6544 -0.2267 -2.1396 24 1 1.8608 -2.6043 -2.0654 25 1 2.8914 -5.2488 -2.7760 26 1 0.4722 -2.1138 1.2362 27 1 1.9487 -2.5856 2.1119 28 1 0.5260 0.0639 2.4659 29 1 1.9900 -0.5206 3.2925 30 1 2.0236 1.0240 2.4085 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218601935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:30 Heat of formation + Delta-G solvation = -15.397153 kcal Electronic energy + Delta-G solvation = -11943.696167 eV Core-core repulsion = 9965.790809 eV Total energy + Delta-G solvation = -1977.905358 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.22112 -35.92170 -34.01118 -32.48568 -29.45309 -27.52183 -26.42791 -24.17703 -22.91200 -19.36720 -18.59635 -17.37560 -16.48252 -16.08604 -15.30610 -15.23395 -14.99507 -14.57964 -13.85906 -13.65619 -13.10539 -12.85964 -12.79517 -12.65889 -12.39807 -12.29569 -11.95680 -11.55104 -11.23421 -10.99982 -10.66048 -9.15675 -8.75552 -8.17776 -6.29170 1.42931 1.43984 1.54810 2.42327 3.09086 3.18089 3.98286 4.09580 4.25243 4.36367 4.49518 4.59992 4.72695 4.74337 4.80771 4.93421 4.94648 5.01478 5.12426 5.16461 5.39365 5.58997 5.76481 6.03889 6.28410 6.35442 6.62816 6.96812 7.10517 7.42809 8.91944 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062417 B = 0.012557 C = 0.011586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.489079 B = 2229.279274 C = 2416.232389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 H 0.096 0.904 4 C 0.056 3.944 5 N -0.686 5.686 6 C 0.220 3.780 7 H -0.044 1.044 8 C -0.530 4.530 9 H 0.057 0.943 10 C 0.020 3.980 11 N -0.925 5.925 12 Si 0.966 3.034 13 H -0.276 1.276 14 H -0.269 1.269 15 H -0.282 1.282 16 C 0.079 3.921 17 N -0.558 5.558 18 C 0.025 3.975 19 H 0.045 0.955 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.002 0.998 23 H 0.078 0.922 24 H 0.347 0.653 25 H 0.266 0.734 26 H 0.029 0.971 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 7.635 4.031 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.023 4.023 3 H 0.114 0.886 4 C -0.074 4.074 5 N -0.321 5.321 6 C 0.112 3.888 7 H -0.026 1.026 8 C -0.569 4.569 9 H 0.075 0.925 10 C -0.179 4.179 11 N -0.565 5.565 12 Si 0.791 3.209 13 H -0.202 1.202 14 H -0.193 1.193 15 H -0.207 1.207 16 C -0.049 4.049 17 N -0.283 5.283 18 C -0.123 4.123 19 H 0.064 0.936 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.020 0.980 23 H 0.096 0.904 24 H 0.168 0.832 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.199 7.739 4.140 9.342 hybrid contribution 0.089 -1.177 -0.448 1.262 sum -3.110 6.563 3.692 8.147 Atomic orbital electron populations 1.22174 0.96419 1.01828 1.01837 1.21762 0.93985 0.97175 0.89395 0.88629 1.22034 0.95799 0.91842 0.97736 1.60950 1.62419 1.01321 1.07374 1.18903 0.90747 0.91674 0.87491 1.02622 1.21444 1.32083 0.96028 1.07392 0.92493 1.25777 0.94412 1.02803 0.94889 1.69803 1.37763 1.37625 1.11314 0.85442 0.78757 0.79377 0.77289 1.20160 1.19347 1.20733 1.22037 0.97031 0.87754 0.98069 1.62369 1.60010 1.02569 1.03315 1.22414 0.98769 0.99430 0.91691 0.93591 0.92023 0.91517 0.97994 0.90403 0.83216 0.92514 0.95270 0.92376 0.95055 0.91525 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.31 8.37 71.98 0.60 -4.71 16 2 C 0.09 3.00 2.97 44.92 0.13 3.14 16 3 H 0.10 2.83 8.14 -2.39 -0.02 2.82 16 4 C 0.06 2.32 6.15 86.31 0.53 2.86 16 5 N -0.69 -34.28 5.85 -495.02 -2.89 -37.17 16 6 C 0.22 11.75 2.55 44.17 0.11 11.86 16 7 H -0.04 -2.67 8.14 -2.38 -0.02 -2.69 16 8 C -0.53 -30.01 8.76 25.60 0.22 -29.79 16 9 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 10 C 0.02 1.13 5.35 84.66 0.45 1.58 16 11 N -0.92 -53.34 11.49 21.45 0.25 -53.10 16 12 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 13 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 C 0.08 3.54 4.46 86.31 0.39 3.93 16 17 N -0.56 -21.19 4.92 -896.55 -4.41 -25.60 16 18 C 0.02 0.71 9.28 127.69 1.19 1.89 16 19 H 0.05 1.80 5.95 -2.38 -0.01 1.78 16 20 H 0.06 1.71 6.48 -2.39 -0.02 1.70 16 21 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 23 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 24 H 0.35 18.95 6.72 -89.69 -0.60 18.35 16 25 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.03 1.32 6.35 -2.39 -0.02 1.30 16 27 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 28 H 0.03 0.85 6.39 -2.39 -0.02 0.84 16 29 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -60.79 234.05 -0.89 -61.69 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.51 Total: 17.47 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 3.63 Total: -9.24 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -7.06 Total: -115.86 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -60.79 -0.89 -61.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218601935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.288 kcal (2) G-P(sol) polarization free energy of solvation -60.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds