Wall clock time and date at job start Mon Mar 30 2020 02:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.48360 * 2 1 4 4 C 1.53052 * 109.48841 * 120.06195 * 2 1 3 5 5 N 1.46961 * 109.36217 * 178.37372 * 4 2 1 6 6 C 1.46958 * 110.88075 * 300.67784 * 5 4 2 7 7 H 1.08997 * 109.48847 * 299.33888 * 6 5 4 8 8 C 1.50693 * 109.48986 * 179.29050 * 6 5 4 9 9 H 1.08000 * 120.00129 * 240.00603 * 8 6 5 10 10 C 1.37874 * 120.00029 * 59.99779 * 8 6 5 11 11 N 1.31512 * 120.00113 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 120.00062 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47188 * 60.00638 * 12 10 8 14 14 H 1.48507 * 109.47108 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47284 * 300.00172 * 12 10 8 16 16 C 1.53052 * 109.36105 * 59.32130 * 6 5 4 17 17 N 1.46949 * 109.36740 * 301.59952 * 16 6 5 18 18 C 1.46906 * 111.00012 * 183.18745 * 17 16 6 19 19 H 1.09001 * 109.46878 * 180.02562 * 1 2 3 20 20 H 1.08992 * 109.47643 * 300.04420 * 1 2 3 21 21 H 1.08998 * 109.46788 * 60.05089 * 1 2 3 22 22 H 1.08996 * 109.49195 * 298.33791 * 4 2 1 23 23 H 1.08997 * 109.48493 * 58.38412 * 4 2 1 24 24 H 1.00901 * 110.99341 * 176.81649 * 5 4 2 25 25 H 0.97001 * 120.00639 * 179.97438 * 11 10 8 26 26 H 1.09004 * 109.48734 * 181.63032 * 16 6 5 27 27 H 1.09007 * 109.48868 * 61.56667 * 16 6 5 28 28 H 1.08992 * 109.47459 * 296.19857 * 18 17 16 29 29 H 1.09004 * 109.47040 * 56.20008 * 18 17 16 30 30 H 1.09000 * 109.47033 * 176.19960 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0277 0.0000 4 6 2.0406 -0.7228 1.2487 5 7 3.5097 -0.7553 1.2264 6 6 4.0001 -1.4489 0.0272 7 1 3.6364 -2.4764 0.0272 8 6 5.5070 -1.4488 0.0272 9 1 6.0470 -0.9817 -0.7831 10 6 6.1964 -2.0450 1.0618 11 7 5.5388 -2.6141 2.0484 12 14 8.0644 -2.0455 1.0615 13 1 8.5598 -0.6456 1.0601 14 1 8.5594 -2.7450 2.2744 15 1 8.5591 -2.7469 -0.1503 16 6 3.4894 -0.7261 -1.2215 17 7 2.0204 -0.6935 -1.1992 18 6 1.4890 -0.0734 -2.4203 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5145 0.8895 21 1 -0.3633 0.5130 -0.8904 22 1 1.7022 -0.1933 2.1393 23 1 1.6541 -1.7418 1.2626 24 1 3.8746 -1.1813 2.0651 25 1 6.0238 -3.0338 2.7761 26 1 3.8279 -1.2556 -2.1121 27 1 3.8756 0.2932 -1.2352 28 1 1.8048 0.9688 -2.4656 29 1 1.8676 -0.6061 -3.2927 30 1 0.4001 -0.1229 -2.4086 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218602015.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:33 Heat of formation + Delta-G solvation = 3.087210 kcal Electronic energy + Delta-G solvation = -11805.376846 eV Core-core repulsion = 9828.273030 eV Total energy + Delta-G solvation = -1977.103816 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.35268 -34.13905 -32.23313 -31.20614 -27.65548 -26.23207 -24.05913 -22.58056 -20.63265 -18.62829 -16.54671 -15.27181 -14.56444 -14.35497 -14.07808 -13.61889 -13.40398 -12.62472 -12.28745 -11.94437 -11.60375 -11.37627 -11.24184 -10.89922 -10.75962 -10.48236 -10.36576 -9.90173 -9.37453 -9.06334 -8.56462 -7.66298 -6.83299 -6.07644 -4.10603 3.32744 3.36810 3.39875 4.39468 4.62966 5.17250 5.43772 5.55614 5.67532 5.82973 5.89182 6.05813 6.11142 6.23071 6.26119 6.40213 6.45161 6.54720 6.66333 6.80046 6.95638 7.49592 7.75222 7.77599 7.93614 8.23494 8.68446 9.01000 9.14700 9.57033 11.03130 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.070325 B = 0.011747 C = 0.010463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.054284 B = 2382.939012 C = 2675.570563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.039 0.961 4 C 0.062 3.938 5 N -0.688 5.688 6 C 0.219 3.781 7 H 0.004 0.996 8 C -0.506 4.506 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.901 5.901 12 Si 0.900 3.100 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.069 3.931 17 N -0.543 5.543 18 C 0.024 3.976 19 H 0.059 0.941 20 H 0.054 0.946 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.021 0.979 24 H 0.363 0.637 25 H 0.264 0.736 26 H 0.062 0.938 27 H 0.027 0.973 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 3.770 -3.481 8.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 H 0.057 0.943 4 C -0.069 4.069 5 N -0.325 5.325 6 C 0.111 3.889 7 H 0.022 0.978 8 C -0.545 4.545 9 H 0.077 0.923 10 C -0.134 4.134 11 N -0.541 5.541 12 Si 0.728 3.272 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.059 4.059 17 N -0.269 5.269 18 C -0.125 4.125 19 H 0.078 0.922 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.039 0.961 24 H 0.187 0.813 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.790 3.802 -3.559 8.557 hybrid contribution 1.058 -0.090 0.241 1.089 sum -5.731 3.712 -3.318 7.592 Atomic orbital electron populations 1.21875 0.95485 1.01985 1.00849 1.21632 0.93705 0.95895 0.91160 0.94342 1.21877 0.92592 0.97472 0.94954 1.60985 1.03167 1.59561 1.08779 1.19028 0.93744 0.91015 0.85131 0.97822 1.21085 0.90587 1.35741 1.07128 0.92300 1.24980 0.98766 0.94365 0.95333 1.69667 1.35755 1.37775 1.10903 0.86535 0.85183 0.78201 0.77295 1.20179 1.21305 1.20298 1.22326 0.84047 0.99175 1.00334 1.62224 1.10671 1.52756 1.01202 1.22367 1.00046 0.96606 0.93452 0.92189 0.92660 0.93027 0.92651 0.96101 0.81282 0.92571 0.91934 0.95427 0.96510 0.92085 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.86 37.16 0.33 -1.81 16 2 C 0.08 1.61 2.56 -67.66 -0.17 1.44 16 3 H 0.04 0.77 8.14 -51.92 -0.42 0.34 16 4 C 0.06 1.31 6.00 -3.76 -0.02 1.29 16 5 N -0.69 -17.37 6.53 -107.81 -0.70 -18.08 16 6 C 0.22 5.78 2.55 -68.81 -0.18 5.60 16 7 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 8 C -0.51 -14.20 8.76 -34.44 -0.30 -14.50 16 9 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 10 C 0.07 1.86 5.34 -17.82 -0.10 1.77 16 11 N -0.90 -25.66 11.49 55.43 0.64 -25.03 16 12 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.07 1.56 4.84 -3.77 -0.02 1.55 16 17 N -0.54 -10.84 4.78 -234.72 -1.12 -11.97 16 18 C 0.02 0.38 9.13 60.07 0.55 0.93 16 19 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.69 6.36 -51.93 -0.33 0.36 16 22 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.36 9.82 6.72 -39.29 -0.26 9.56 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 27 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 30 H 0.06 0.88 6.25 -51.93 -0.32 0.55 16 LS Contribution 238.49 15.07 3.59 3.59 Total: -1.00 -28.70 238.49 -7.21 -35.91 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.69 Total: 2.91 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 0.09 Total: -3.73 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -1.19 Total: -55.07 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.70 -7.21 -35.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218602015.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.002 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds