Wall clock time and date at job start Mon Mar 30 2020 02:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.48360 * 2 1 4 4 C 1.53052 * 109.48841 * 120.06195 * 2 1 3 5 5 N 1.46961 * 109.36217 * 178.37372 * 4 2 1 6 6 C 1.46958 * 110.88075 * 300.67784 * 5 4 2 7 7 H 1.08997 * 109.48847 * 299.33888 * 6 5 4 8 8 C 1.50693 * 109.48986 * 179.29050 * 6 5 4 9 9 H 1.08000 * 120.00129 * 240.00603 * 8 6 5 10 10 C 1.37874 * 120.00029 * 59.99779 * 8 6 5 11 11 N 1.31512 * 120.00113 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 120.00062 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47188 * 60.00638 * 12 10 8 14 14 H 1.48507 * 109.47108 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47284 * 300.00172 * 12 10 8 16 16 C 1.53052 * 109.36105 * 59.32130 * 6 5 4 17 17 N 1.46949 * 109.36740 * 301.59952 * 16 6 5 18 18 C 1.46906 * 111.00012 * 183.18745 * 17 16 6 19 19 H 1.09001 * 109.46878 * 180.02562 * 1 2 3 20 20 H 1.08992 * 109.47643 * 300.04420 * 1 2 3 21 21 H 1.08998 * 109.46788 * 60.05089 * 1 2 3 22 22 H 1.08996 * 109.49195 * 298.33791 * 4 2 1 23 23 H 1.08997 * 109.48493 * 58.38412 * 4 2 1 24 24 H 1.00901 * 110.99341 * 176.81649 * 5 4 2 25 25 H 0.97001 * 120.00639 * 179.97438 * 11 10 8 26 26 H 1.09004 * 109.48734 * 181.63032 * 16 6 5 27 27 H 1.09007 * 109.48868 * 61.56667 * 16 6 5 28 28 H 1.08992 * 109.47459 * 296.19857 * 18 17 16 29 29 H 1.09004 * 109.47040 * 56.20008 * 18 17 16 30 30 H 1.09000 * 109.47033 * 176.19960 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0277 0.0000 4 6 2.0406 -0.7228 1.2487 5 7 3.5097 -0.7553 1.2264 6 6 4.0001 -1.4489 0.0272 7 1 3.6364 -2.4764 0.0272 8 6 5.5070 -1.4488 0.0272 9 1 6.0470 -0.9817 -0.7831 10 6 6.1964 -2.0450 1.0618 11 7 5.5388 -2.6141 2.0484 12 14 8.0644 -2.0455 1.0615 13 1 8.5598 -0.6456 1.0601 14 1 8.5594 -2.7450 2.2744 15 1 8.5591 -2.7469 -0.1503 16 6 3.4894 -0.7261 -1.2215 17 7 2.0204 -0.6935 -1.1992 18 6 1.4890 -0.0734 -2.4203 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5145 0.8895 21 1 -0.3633 0.5130 -0.8904 22 1 1.7022 -0.1933 2.1393 23 1 1.6541 -1.7418 1.2626 24 1 3.8746 -1.1813 2.0651 25 1 6.0238 -3.0338 2.7761 26 1 3.8279 -1.2556 -2.1121 27 1 3.8756 0.2932 -1.2352 28 1 1.8048 0.9688 -2.4656 29 1 1.8676 -0.6061 -3.2927 30 1 0.4001 -0.1229 -2.4086 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218602015.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:33 Heat of formation + Delta-G solvation = -18.648923 kcal Electronic energy + Delta-G solvation = -11806.319396 eV Core-core repulsion = 9828.273030 eV Total energy + Delta-G solvation = -1978.046366 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01821 -36.01514 -34.04461 -32.99520 -29.38083 -27.82666 -25.89238 -24.23104 -22.38872 -20.35883 -18.61881 -17.11561 -16.21963 -16.16826 -15.62399 -15.34997 -15.12873 -14.43417 -13.86741 -13.65110 -13.09735 -12.84815 -12.77437 -12.70020 -12.51573 -12.19719 -12.01648 -11.69147 -11.25577 -11.01275 -10.66790 -9.23818 -8.84504 -8.19060 -6.31096 1.42811 1.45132 1.52821 2.41497 3.07120 3.10365 3.89950 4.06131 4.25386 4.35268 4.44097 4.58356 4.68821 4.74508 4.81445 4.85880 4.95627 4.98391 5.04456 5.14511 5.33911 5.46926 5.74208 6.00950 6.24805 6.31621 6.59913 6.93399 7.07028 7.40842 8.90635 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.070325 B = 0.011747 C = 0.010463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.054284 B = 2382.939012 C = 2675.570563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.085 3.915 3 H 0.032 0.968 4 C 0.058 3.942 5 N -0.696 5.696 6 C 0.219 3.781 7 H -0.040 1.040 8 C -0.534 4.534 9 H 0.058 0.942 10 C 0.020 3.980 11 N -0.925 5.925 12 Si 0.968 3.032 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.081 3.919 17 N -0.557 5.557 18 C 0.024 3.976 19 H 0.057 0.943 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.006 0.994 24 H 0.348 0.652 25 H 0.267 0.733 26 H 0.064 0.936 27 H 0.018 0.982 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.299 4.651 -4.075 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.024 4.024 3 H 0.050 0.950 4 C -0.072 4.072 5 N -0.331 5.331 6 C 0.111 3.889 7 H -0.022 1.022 8 C -0.573 4.573 9 H 0.076 0.924 10 C -0.179 4.179 11 N -0.565 5.565 12 Si 0.793 3.207 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.195 1.195 16 C -0.047 4.047 17 N -0.282 5.282 18 C -0.124 4.124 19 H 0.076 0.924 20 H 0.093 0.907 21 H 0.092 0.908 22 H 0.095 0.905 23 H 0.024 0.976 24 H 0.170 0.830 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.391 4.696 -4.174 9.700 hybrid contribution 1.181 -0.375 0.441 1.315 sum -6.210 4.321 -3.733 8.436 Atomic orbital electron populations 1.21805 0.91808 1.02499 1.03000 1.21694 0.96490 0.94656 0.89549 0.95044 1.22055 0.90135 0.97400 0.97604 1.60983 1.05781 1.58696 1.07659 1.18922 0.93352 0.89345 0.87289 1.02234 1.21419 0.91844 1.36445 1.07560 0.92403 1.25800 1.03529 0.93766 0.94827 1.69790 1.37460 1.37971 1.11277 0.85474 0.79364 0.78342 0.77562 1.19685 1.20712 1.19539 1.22036 0.86335 0.97924 0.98447 1.62200 1.08609 1.54144 1.03253 1.22467 1.01507 0.96692 0.91691 0.92433 0.90666 0.90809 0.90510 0.97551 0.83008 0.92430 0.91731 0.96328 0.95883 0.91297 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 8.86 71.98 0.64 -2.89 16 2 C 0.08 3.08 2.56 44.92 0.12 3.19 16 3 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 4 C 0.06 2.47 6.00 86.31 0.52 2.98 16 5 N -0.70 -35.85 6.53 -495.01 -3.23 -39.08 16 6 C 0.22 11.89 2.55 44.17 0.11 12.01 16 7 H -0.04 -2.45 8.14 -2.39 -0.02 -2.47 16 8 C -0.53 -30.52 8.76 25.60 0.22 -30.30 16 9 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 10 C 0.02 1.12 5.34 84.65 0.45 1.57 16 11 N -0.92 -53.65 11.49 21.45 0.25 -53.41 16 12 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 16 C 0.08 3.70 4.84 86.31 0.42 4.11 16 17 N -0.56 -21.53 4.78 -896.53 -4.29 -25.82 16 18 C 0.02 0.70 9.13 127.69 1.17 1.87 16 19 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 20 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.07 1.64 6.36 -2.39 -0.02 1.63 16 22 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 23 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 24 H 0.35 19.38 6.72 -89.69 -0.60 18.78 16 25 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 26 H 0.06 2.85 8.13 -2.38 -0.02 2.83 16 27 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 1.90 8.13 -2.38 -0.02 1.88 16 30 H 0.09 2.14 6.25 -2.39 -0.01 2.12 16 Total: -1.00 -62.15 238.49 -1.10 -63.25 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.50 Total: 16.42 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 3.64 Total: -7.45 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -7.27 Total: -118.31 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -62.15 -1.10 -63.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218602015.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.603 kcal (2) G-P(sol) polarization free energy of solvation -62.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds