Wall clock time and date at job start Mon Mar 30 2020 02:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49040 * 2 1 4 4 C 1.53051 * 109.49023 * 239.95390 * 2 1 3 5 5 N 1.46954 * 109.36643 * 181.61005 * 4 2 1 6 6 C 1.46954 * 110.87727 * 59.32129 * 5 4 2 7 7 C 1.53051 * 109.36775 * 300.67795 * 6 5 4 8 8 H 1.09002 * 109.48789 * 298.43589 * 7 6 5 9 9 C 1.50700 * 109.48925 * 178.38972 * 7 6 5 10 10 H 1.07999 * 119.99797 * 240.03965 * 9 7 6 11 11 C 1.37875 * 119.99947 * 60.04920 * 9 7 6 12 12 N 1.31511 * 120.00180 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 120.00093 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47252 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47417 * 119.99471 * 13 11 9 16 16 H 1.48502 * 109.47352 * 239.99770 * 13 11 9 17 17 N 1.46954 * 109.50372 * 120.05309 * 2 1 3 18 18 C 1.46896 * 111.00378 * 303.16454 * 17 2 1 19 19 H 1.08994 * 109.47164 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47253 * 300.04886 * 1 2 3 21 21 H 1.09004 * 109.46926 * 60.04119 * 1 2 3 22 22 H 1.09002 * 109.48654 * 61.64280 * 4 2 1 23 23 H 1.09002 * 109.48786 * 301.57997 * 4 2 1 24 24 H 1.00900 * 110.99722 * 295.45784 * 5 4 2 25 25 H 1.09004 * 109.49112 * 180.71442 * 6 5 4 26 26 H 1.09002 * 109.49324 * 60.65069 * 6 5 4 27 27 H 0.97001 * 120.00138 * 180.02562 * 12 11 9 28 28 H 1.09006 * 109.47218 * 296.20306 * 18 17 2 29 29 H 1.08998 * 109.47321 * 56.19911 * 18 17 2 30 30 H 1.08996 * 109.47514 * 176.20388 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2489 5 7 3.5097 -0.7546 -1.2268 6 6 4.0003 -1.4484 -0.0278 7 6 3.4897 -0.7260 1.2211 8 1 3.8757 0.2933 1.2350 9 6 3.9585 -1.4579 2.4522 10 1 3.2376 -1.8585 3.1495 11 6 5.3076 -1.6160 2.6884 12 7 6.1854 -1.1285 1.8390 13 14 5.8887 -2.5227 4.2147 14 1 4.7122 -2.9694 5.0031 15 1 6.6931 -3.7044 3.8124 16 1 6.7228 -1.6146 5.0424 17 7 2.0206 -0.6937 1.1990 18 6 1.4893 -0.0741 2.4203 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5146 0.8895 21 1 -0.3633 0.5132 -0.8904 22 1 1.7019 -0.1928 -2.1394 23 1 1.6547 -1.7417 -1.2628 24 1 3.8927 0.1768 -1.2878 25 1 5.0903 -1.4480 -0.0279 26 1 3.6367 -2.4759 -0.0278 27 1 7.1346 -1.2401 2.0050 28 1 1.8601 0.9478 2.5002 29 1 0.4002 -0.0630 2.3779 30 1 1.8132 -0.6471 3.2890 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218602640.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:53 Heat of formation + Delta-G solvation = 6.614888 kcal Electronic energy + Delta-G solvation = -11971.098675 eV Core-core repulsion = 9994.147830 eV Total energy + Delta-G solvation = -1976.950845 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.50750 -33.46637 -33.34871 -30.94112 -27.13539 -25.69781 -25.03470 -21.88454 -20.79916 -19.15599 -16.32067 -15.22270 -15.01861 -14.45445 -14.02889 -13.65678 -13.03448 -12.35266 -12.13385 -11.79583 -11.60627 -11.11667 -10.99883 -10.82709 -10.75208 -10.47268 -10.31703 -10.01720 -9.69105 -9.21510 -8.53029 -7.47974 -7.14599 -6.07251 -4.10197 3.27520 3.35578 3.39920 4.37122 4.89376 5.20315 5.30570 5.46248 5.72784 5.83348 5.96866 6.08848 6.24812 6.33314 6.37949 6.41340 6.66707 6.75343 6.80921 7.02688 7.24383 7.62938 7.74998 7.90570 8.10554 8.16400 8.37310 8.57534 8.96036 9.54174 11.00227 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.055098 B = 0.014097 C = 0.011848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.059272 B = 1985.812486 C = 2362.659798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.040 3.960 3 H 0.023 0.977 4 C 0.068 3.932 5 N -0.698 5.698 6 C 0.065 3.935 7 C 0.186 3.814 8 H -0.004 1.004 9 C -0.503 4.503 10 H 0.065 0.935 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.899 3.101 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.285 1.285 17 N -0.532 5.532 18 C 0.036 3.964 19 H 0.060 0.940 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.327 0.673 25 H 0.107 0.893 26 H 0.055 0.945 27 H 0.262 0.738 28 H 0.008 0.992 29 H 0.047 0.953 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.843 1.971 -2.475 7.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 H 0.041 0.959 4 C -0.062 4.062 5 N -0.325 5.325 6 C -0.064 4.064 7 C 0.078 3.922 8 H 0.013 0.987 9 C -0.542 4.542 10 H 0.083 0.917 11 C -0.142 4.142 12 N -0.533 5.533 13 Si 0.727 3.273 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.211 1.211 17 N -0.257 5.257 18 C -0.113 4.113 19 H 0.079 0.921 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.143 0.857 25 H 0.125 0.875 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.746 0.914 -2.943 7.416 hybrid contribution 0.491 1.142 1.624 2.045 sum -6.255 2.056 -1.320 6.715 Atomic orbital electron populations 1.21823 0.95450 1.01945 1.00619 1.22367 0.95088 0.95474 0.94149 0.95869 1.22041 0.89405 1.00379 0.94401 1.60985 1.06071 1.22427 1.42989 1.22328 1.02405 0.96554 0.85146 1.19926 0.80887 0.95183 0.96221 0.98684 1.21129 0.91511 1.35404 1.06195 0.91733 1.24955 0.96694 0.95674 0.96904 1.69863 1.01587 1.45926 1.35912 0.86421 0.78686 0.79445 0.82761 1.19749 1.20889 1.21145 1.62237 1.12223 1.51336 0.99938 1.22244 0.97731 0.96591 0.94692 0.92109 0.92987 0.93173 0.92131 0.90984 0.85731 0.87532 0.92632 0.92844 0.97370 0.93391 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.87 37.16 0.33 -1.81 16 2 C 0.04 0.76 2.56 -67.66 -0.17 0.58 16 3 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 4 C 0.07 1.26 6.00 -3.77 -0.02 1.24 16 5 N -0.70 -14.61 6.91 -113.64 -0.79 -15.39 16 6 C 0.06 1.59 5.76 -3.77 -0.02 1.56 16 7 C 0.19 4.73 1.94 -68.80 -0.13 4.60 16 8 H 0.00 -0.12 8.14 -51.93 -0.42 -0.55 16 9 C -0.50 -13.81 7.93 -34.44 -0.27 -14.09 16 10 H 0.06 1.78 6.45 -52.49 -0.34 1.44 16 11 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 12 N -0.89 -25.22 11.34 55.43 0.63 -24.59 16 13 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 N -0.53 -11.81 4.59 -228.14 -1.05 -12.86 16 18 C 0.04 0.73 8.90 60.06 0.53 1.27 16 19 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 20 H 0.05 0.77 6.28 -51.93 -0.33 0.44 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 24 H 0.33 6.63 8.89 -39.29 -0.35 6.28 16 25 H 0.11 2.88 6.12 -51.93 -0.32 2.56 16 26 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.05 0.84 6.04 -51.93 -0.31 0.52 16 30 H 0.07 1.61 6.28 -51.93 -0.33 1.28 16 LS Contribution 234.47 15.07 3.53 3.53 Total: -1.00 -28.05 234.47 -7.03 -35.08 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.49 Total: 3.11 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 0.15 Total: -5.12 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -1.20 Total: -52.84 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.05 -7.03 -35.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218602640.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.698 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds